miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 108490 1.11 0.002803
Target:  5'- uACCUGGUCUUCGUGUACACGCAGCGCu -3'
miRNA:   3'- -UGGACCAGAAGCACAUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 128207 0.85 0.154451
Target:  5'- cGCCUGGcccgUCUUCGUGUGCACcuucaaCAGCGCg -3'
miRNA:   3'- -UGGACC----AGAAGCACAUGUGc-----GUCGCG- -5'
6376 3' -54 NC_001847.1 + 78665 0.77 0.415889
Target:  5'- cGCCUGcGUCgccggCGUGcGCACGCgGGCGCu -3'
miRNA:   3'- -UGGAC-CAGaa---GCACaUGUGCG-UCGCG- -5'
6376 3' -54 NC_001847.1 + 66864 0.76 0.471426
Target:  5'- cGCCUcucGGgCUUCGUGUACGCGCccaaccgggAGUGCu -3'
miRNA:   3'- -UGGA---CCaGAAGCACAUGUGCG---------UCGCG- -5'
6376 3' -54 NC_001847.1 + 122630 0.75 0.510461
Target:  5'- gACCUGGUCUUUGacgACGCGcCGGCuGCg -3'
miRNA:   3'- -UGGACCAGAAGCacaUGUGC-GUCG-CG- -5'
6376 3' -54 NC_001847.1 + 26772 0.74 0.55078
Target:  5'- gGCCUGGUCa--GUGcGCGCGCccuccuGCGCg -3'
miRNA:   3'- -UGGACCAGaagCACaUGUGCGu-----CGCG- -5'
6376 3' -54 NC_001847.1 + 131101 0.74 0.56102
Target:  5'- cACCgUGGaUCUcUCGgg-GCGCGCGGCGCg -3'
miRNA:   3'- -UGG-ACC-AGA-AGCacaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 33319 0.74 0.56102
Target:  5'- aGCCUGuUgUUCGUGgcgGCGCGCuGCGUg -3'
miRNA:   3'- -UGGACcAgAAGCACa--UGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 31062 0.73 0.602424
Target:  5'- cGCCgcugugGGUUUUCGcaaccaGUACgACGCGGCGCu -3'
miRNA:   3'- -UGGa-----CCAGAAGCa-----CAUG-UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 134746 0.73 0.602424
Target:  5'- cCCUcGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3'
miRNA:   3'- uGGA-CCAGA---AGCa------CA---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 31932 0.73 0.612851
Target:  5'- gGCCccGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3'
miRNA:   3'- -UGGa-CCAGA---AGCa------CA---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 105329 0.73 0.633742
Target:  5'- gACCUGcGUCgUCGUGgGCGCcGgGGCGCu -3'
miRNA:   3'- -UGGAC-CAGaAGCACaUGUG-CgUCGCG- -5'
6376 3' -54 NC_001847.1 + 52285 0.72 0.665047
Target:  5'- cGCC-GG-CUUUGUGUGCGCGaccgcgGGCGCg -3'
miRNA:   3'- -UGGaCCaGAAGCACAUGUGCg-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 99683 0.72 0.675438
Target:  5'- -gCUGG-CUUUGcg-GCGCGCGGCGCg -3'
miRNA:   3'- ugGACCaGAAGCacaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 72858 0.71 0.726652
Target:  5'- uGCCUGGg---CGUGgacaucCACGCAGuCGCg -3'
miRNA:   3'- -UGGACCagaaGCACau----GUGCGUC-GCG- -5'
6376 3' -54 NC_001847.1 + 76799 0.71 0.740663
Target:  5'- cGCCUGGcCgcccucugcuggcagUUUGUGcacUAUACGCGGCGCc -3'
miRNA:   3'- -UGGACCaG---------------AAGCAC---AUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 66748 0.71 0.74661
Target:  5'- uACCUGGccgagugCUUCGUGU-CGCuCGGCGUc -3'
miRNA:   3'- -UGGACCa------GAAGCACAuGUGcGUCGCG- -5'
6376 3' -54 NC_001847.1 + 67731 0.71 0.74661
Target:  5'- aGCCUGGcCUcUCG-GcACACGCgccGGCGCa -3'
miRNA:   3'- -UGGACCaGA-AGCaCaUGUGCG---UCGCG- -5'
6376 3' -54 NC_001847.1 + 133456 0.71 0.756438
Target:  5'- cCCUGGUUccCGUGUACAUGCA-CGg -3'
miRNA:   3'- uGGACCAGaaGCACAUGUGCGUcGCg -5'
6376 3' -54 NC_001847.1 + 37053 0.7 0.766151
Target:  5'- aGCCUGGgCUgggggCGgcugGUGCACGCGGUa- -3'
miRNA:   3'- -UGGACCaGAa----GCa---CAUGUGCGUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.