miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 29413 0.66 0.933763
Target:  5'- aACCUGGUUUgacc-UGCGCGCcagcgAGCGCu -3'
miRNA:   3'- -UGGACCAGAagcacAUGUGCG-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 30187 0.69 0.838591
Target:  5'- gACCUGGcCgacgCG-GUGCGCGgCGcGCGCg -3'
miRNA:   3'- -UGGACCaGaa--GCaCAUGUGC-GU-CGCG- -5'
6376 3' -54 NC_001847.1 + 30237 0.69 0.854914
Target:  5'- gGCCgaGGUgcgCGUGUcGCugGCGGCGUu -3'
miRNA:   3'- -UGGa-CCAgaaGCACA-UGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 31062 0.73 0.602424
Target:  5'- cGCCgcugugGGUUUUCGcaaccaGUACgACGCGGCGCu -3'
miRNA:   3'- -UGGa-----CCAGAAGCa-----CAUG-UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 31756 0.67 0.91732
Target:  5'- cGCgUGGUCagCGUGcACcCGCGcGCGCc -3'
miRNA:   3'- -UGgACCAGaaGCACaUGuGCGU-CGCG- -5'
6376 3' -54 NC_001847.1 + 31932 0.73 0.612851
Target:  5'- gGCCccGGUCUcggUCGgagcgcgGUccgGCGCGCGGCGCg -3'
miRNA:   3'- -UGGa-CCAGA---AGCa------CA---UGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 32878 0.67 0.898647
Target:  5'- uCCUGGcgCUggaGggcacgGUGCGCGCcGCGCg -3'
miRNA:   3'- uGGACCa-GAag-Ca-----CAUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 33319 0.74 0.56102
Target:  5'- aGCCUGuUgUUCGUGgcgGCGCGCuGCGUg -3'
miRNA:   3'- -UGGACcAgAAGCACa--UGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 33343 0.68 0.877806
Target:  5'- gGCCUGGguggCGcUGcUGCACGaGGCGCa -3'
miRNA:   3'- -UGGACCagaaGC-AC-AUGUGCgUCGCG- -5'
6376 3' -54 NC_001847.1 + 33777 0.7 0.766151
Target:  5'- uGCCgcugcagGG-CUUCGcgggGcUGCGCGCGGCGCc -3'
miRNA:   3'- -UGGa------CCaGAAGCa---C-AUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 33920 0.66 0.95222
Target:  5'- cGCCUGuGgcagcCUUCGgccgGUAC-CGCgaGGCGCu -3'
miRNA:   3'- -UGGAC-Ca----GAAGCa---CAUGuGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 35918 0.68 0.862764
Target:  5'- cGCgUGGgagcCUUUGUGgcgGCGCGCcgccGCGCg -3'
miRNA:   3'- -UGgACCa---GAAGCACa--UGUGCGu---CGCG- -5'
6376 3' -54 NC_001847.1 + 35950 0.69 0.821486
Target:  5'- cGCCUGGg---CGc-UGCugGCGGCGCu -3'
miRNA:   3'- -UGGACCagaaGCacAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 36507 0.69 0.821486
Target:  5'- uUCUGGgcgacgaagCggCgGUGUGCACGCuGCGCg -3'
miRNA:   3'- uGGACCa--------GaaG-CACAUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 37036 0.69 0.821486
Target:  5'- gACCUGG---UCGUGgcCGCGCucaugGGCGCc -3'
miRNA:   3'- -UGGACCagaAGCACauGUGCG-----UCGCG- -5'
6376 3' -54 NC_001847.1 + 37053 0.7 0.766151
Target:  5'- aGCCUGGgCUgggggCGgcugGUGCACGCGGUa- -3'
miRNA:   3'- -UGGACCaGAa----GCa---CAUGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 37695 0.66 0.947973
Target:  5'- cGCgCUGGaCcUCGUcacGUGCGCGCugcugcugGGCGCg -3'
miRNA:   3'- -UG-GACCaGaAGCA---CAUGUGCG--------UCGCG- -5'
6376 3' -54 NC_001847.1 + 41720 0.66 0.933763
Target:  5'- gGCCaGGg---CGUGUACAgCGCcguGCGCu -3'
miRNA:   3'- -UGGaCCagaaGCACAUGU-GCGu--CGCG- -5'
6376 3' -54 NC_001847.1 + 42061 0.67 0.928531
Target:  5'- uGCCUGGggCUg---GUGcCGCuGCGGCGCa -3'
miRNA:   3'- -UGGACCa-GAagcaCAU-GUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 46203 0.67 0.905116
Target:  5'- ---aGGUCggCGUGUccguCGCGCAugGCGCa -3'
miRNA:   3'- uggaCCAGaaGCACAu---GUGCGU--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.