miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 116712 0.66 0.639976
Target:  5'- --cGGCUggcCGCGgCgCACGUGGCCa- -3'
miRNA:   3'- cucCCGAaa-GCGCgG-GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 37773 0.66 0.639976
Target:  5'- gGAGGGC--UCGCGCCugauCAUGUgccugcGGCUGUu -3'
miRNA:   3'- -CUCCCGaaAGCGCGG----GUGCA------CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 35123 0.66 0.634957
Target:  5'- gGAGGGCgaccuggcggcCGUGCCUcggcucgccaaguACGUGGCCu- -3'
miRNA:   3'- -CUCCCGaaa--------GCGCGGG-------------UGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 59347 0.66 0.629938
Target:  5'- cGGcGGCgaggUCGCGCgCCGCGccgagcccgcGGCCGUg -3'
miRNA:   3'- cUC-CCGaa--AGCGCG-GGUGCa---------CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 54601 0.66 0.629938
Target:  5'- uGGcGGCg--CGCGCCCgcgccgaugccgACGUGcGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCGCGGG------------UGCAC-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 132382 0.66 0.629938
Target:  5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 44033 0.66 0.629938
Target:  5'- aGAGGGCUgcagCGagGCgCGCGUcggGGCCGc -3'
miRNA:   3'- -CUCCCGAaa--GCg-CGgGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 29569 0.66 0.629938
Target:  5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 87595 0.66 0.629938
Target:  5'- -cGGGCUcccCGCGCCCGcCGUG-CUGg -3'
miRNA:   3'- cuCCCGAaa-GCGCGGGU-GCACcGGCa -5'
6376 5' -60.9 NC_001847.1 + 131231 0.66 0.62793
Target:  5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3'
miRNA:   3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 28418 0.66 0.62793
Target:  5'- -cGGGCgcgcaaccgGCGCCCGCGcUGGCUa- -3'
miRNA:   3'- cuCCCGaaag-----CGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 96612 0.66 0.619901
Target:  5'- -cGGGUUUUccuugCGCGUgCGCGggGGCCGg -3'
miRNA:   3'- cuCCCGAAA-----GCGCGgGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 14142 0.66 0.619901
Target:  5'- cGGGGCc--CGCGCCUggGcGGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCGGGugCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 127031 0.66 0.619901
Target:  5'- uGGGGCcc-CGCGCCUGCGcUGGCg-- -3'
miRNA:   3'- cUCCCGaaaGCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 14529 0.66 0.619901
Target:  5'- cGGcGGCgcUCGCuGCCCGCGgugccGCCGUa -3'
miRNA:   3'- cUC-CCGaaAGCG-CGGGUGCac---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 47872 0.66 0.616892
Target:  5'- -cGGGCgcgcgcagcgcgcgCGCGCCCGCGc-GCCGg -3'
miRNA:   3'- cuCCCGaaa-----------GCGCGGGUGCacCGGCa -5'
6376 5' -60.9 NC_001847.1 + 130220 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 27407 0.67 0.609873
Target:  5'- gGGGGGCgcugUUGcCGCCgGCGcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGC-GCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 73186 0.67 0.609873
Target:  5'- cGGcGGCggagUCG-GCCCGCGcgGGCCGc -3'
miRNA:   3'- cUC-CCGaa--AGCgCGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 124721 0.67 0.609873
Target:  5'- cGGGGGCggcagCGCGaaCCgCGCGggggagGGCCGUc -3'
miRNA:   3'- -CUCCCGaaa--GCGC--GG-GUGCa-----CCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.