miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 89757 0.69 0.479519
Target:  5'- -cGGGCUgcggcacgugcaCGCGCCgGCGUacgaGGCCGUc -3'
miRNA:   3'- cuCCCGAaa----------GCGCGGgUGCA----CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 84681 0.69 0.464794
Target:  5'- ---uGCUgUCGCGCggcgcUCACGUGGCCGUa -3'
miRNA:   3'- cuccCGAaAGCGCG-----GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 32826 0.7 0.394988
Target:  5'- cGAGcGCg--CGagGCCCGCGUGGCCGc -3'
miRNA:   3'- -CUCcCGaaaGCg-CGGGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 33649 0.73 0.297025
Target:  5'- cGA-GGCg--CGCGCgCGCGUGGCCGc -3'
miRNA:   3'- -CUcCCGaaaGCGCGgGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 121756 0.68 0.521121
Target:  5'- -cGGGCccgcggCGCGCCCggACGUGcgcGCCGUu -3'
miRNA:   3'- cuCCCGaaa---GCGCGGG--UGCAC---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 91731 0.68 0.502022
Target:  5'- cGAGGcccaGCUgcaGCGCCCugcgcGCGUcGGCCGUg -3'
miRNA:   3'- -CUCC----CGAaagCGCGGG-----UGCA-CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 76902 0.7 0.43784
Target:  5'- gGAGGGCggUCGCGCgCCGCcgcuGCCGc -3'
miRNA:   3'- -CUCCCGaaAGCGCG-GGUGcac-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 50670 0.73 0.270933
Target:  5'- gGAGGGCga-CGUGCCCuGCG-GGCUGUg -3'
miRNA:   3'- -CUCCCGaaaGCGCGGG-UGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 70676 0.68 0.500129
Target:  5'- uGGGGCUggaggggaccgCGgGCCCGgGgcUGGCCGUg -3'
miRNA:   3'- cUCCCGAaa---------GCgCGGGUgC--ACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 69551 0.74 0.252597
Target:  5'- -cGGGCguggaugCGCGUgugccuggggggCCACGUGGCCGUg -3'
miRNA:   3'- cuCCCGaaa----GCGCG------------GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 19010 0.69 0.455712
Target:  5'- -cGGGCcg-CGCGCCCcaGCGcccGGCCGa -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCa--CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 21872 0.69 0.483236
Target:  5'- cGGGGGCUgcggCGCGCUgcCGaGGCCGa -3'
miRNA:   3'- -CUCCCGAaa--GCGCGGguGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 61943 0.7 0.420376
Target:  5'- cAGcGGCgg-CGCgGCCCGCGcgGGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCG-CGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 42742 0.7 0.394988
Target:  5'- -cGGGCUg--GCGCCCcccuGgGUGGCCGa -3'
miRNA:   3'- cuCCCGAaagCGCGGG----UgCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 113491 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 43580 0.72 0.317846
Target:  5'- -cGGGCgacgCGCGCCCcaGCGUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-GCGCGGG--UGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 39626 0.68 0.530777
Target:  5'- aGGGGCaagccuggCGCGCCCGCcaGGCCc- -3'
miRNA:   3'- cUCCCGaaa-----GCGCGGGUGcaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 130509 0.68 0.521121
Target:  5'- uGAGGcGCgcgaGCGCCgGCG-GGCCGc -3'
miRNA:   3'- -CUCC-CGaaagCGCGGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 32273 0.68 0.511535
Target:  5'- -cGuGGCUcgCGcCGUCCGCGUGGCgCGg -3'
miRNA:   3'- cuC-CCGAaaGC-GCGGGUGCACCG-GCa -5'
6376 5' -60.9 NC_001847.1 + 80003 0.68 0.502022
Target:  5'- gGGGGGCUcuaCGCGCgCGCGUuuGGCgCGg -3'
miRNA:   3'- -CUCCCGAaa-GCGCGgGUGCA--CCG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.