miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 55750 0.76 0.171508
Target:  5'- --cGGC--UCGCGCCCGCGcGGCCGUg -3'
miRNA:   3'- cucCCGaaAGCGCGGGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 76902 0.7 0.43784
Target:  5'- gGAGGGCggUCGCGCgCCGCcgcuGCCGc -3'
miRNA:   3'- -CUCCCGaaAGCGCG-GGUGcac-CGGCa -5'
6376 5' -60.9 NC_001847.1 + 84681 0.69 0.464794
Target:  5'- ---uGCUgUCGCGCggcgcUCACGUGGCCGUa -3'
miRNA:   3'- cuccCGAaAGCGCG-----GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 43580 0.72 0.317846
Target:  5'- -cGGGCgacgCGCGCCCcaGCGUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-GCGCGGG--UGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 19353 0.72 0.339746
Target:  5'- -cGGGuCUUgcgCGCGCCCGacgGUGGCCa- -3'
miRNA:   3'- cuCCC-GAAa--GCGCGGGUg--CACCGGca -5'
6376 5' -60.9 NC_001847.1 + 113491 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 74270 0.71 0.386749
Target:  5'- uGGGGCccgcgcgCGCGCUCGCGcUGGCCu- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 42742 0.7 0.394988
Target:  5'- -cGGGCUg--GCGCCCcccuGgGUGGCCGa -3'
miRNA:   3'- cuCCCGAaagCGCGGG----UgCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 4184 0.7 0.43784
Target:  5'- -uGGGCcg-CGCGCCCGUG-GGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 106730 0.7 0.411804
Target:  5'- -cGGGCgccgguugCGCGCCCGCGcUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-----GCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 32826 0.7 0.394988
Target:  5'- cGAGcGCg--CGagGCCCGCGUGGCCGc -3'
miRNA:   3'- -CUCcCGaaaGCg-CGGGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 69551 0.74 0.252597
Target:  5'- -cGGGCguggaugCGCGUgugccuggggggCCACGUGGCCGUg -3'
miRNA:   3'- cuCCCGaaa----GCGCG------------GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 61943 0.7 0.420376
Target:  5'- cAGcGGCgg-CGCgGCCCGCGcgGGCCGa -3'
miRNA:   3'- cUC-CCGaaaGCG-CGGGUGCa-CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 50670 0.73 0.270933
Target:  5'- gGAGGGCga-CGUGCCCuGCG-GGCUGUg -3'
miRNA:   3'- -CUCCCGaaaGCGCGGG-UGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 108540 0.71 0.386749
Target:  5'- gGAGGGCUUaCcUGCCCGCGgGGCgGUu -3'
miRNA:   3'- -CUCCCGAAaGcGCGGGUGCaCCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 70532 0.7 0.420376
Target:  5'- -uGGGCgg-CGUGCUgGCGcUGGCCGa -3'
miRNA:   3'- cuCCCGaaaGCGCGGgUGC-ACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 19010 0.69 0.455712
Target:  5'- -cGGGCcg-CGCGCCCcaGCGcccGGCCGa -3'
miRNA:   3'- cuCCCGaaaGCGCGGG--UGCa--CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 33649 0.73 0.297025
Target:  5'- cGA-GGCg--CGCGCgCGCGUGGCCGc -3'
miRNA:   3'- -CUcCCGaaaGCGCGgGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 103167 0.72 0.339746
Target:  5'- -cGGGC-UUCGCGCCC-CGgGGCCc- -3'
miRNA:   3'- cuCCCGaAAGCGCGGGuGCaCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.