miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 60385 0.66 0.660027
Target:  5'- aGGGGGCg--CGCGCcgaCCGCGUcucccaGCCGg -3'
miRNA:   3'- -CUCCCGaaaGCGCG---GGUGCAc-----CGGCa -5'
6376 5' -60.9 NC_001847.1 + 55914 0.66 0.650008
Target:  5'- cGGGGag--CGCGCCCGugaucCGcGGCCGg -3'
miRNA:   3'- cUCCCgaaaGCGCGGGU-----GCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 98940 0.66 0.650008
Target:  5'- gGAGGGCg--CGCaGCCCcucguACGcGGCCu- -3'
miRNA:   3'- -CUCCCGaaaGCG-CGGG-----UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 73235 0.66 0.645996
Target:  5'- gGGGGGCggcggcgcgggCGCGCUCGa--GGCCGUg -3'
miRNA:   3'- -CUCCCGaaa--------GCGCGGGUgcaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 128817 0.66 0.639976
Target:  5'- cGGGGCaccCGCGU--ACGUGGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCGggUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 116712 0.66 0.639976
Target:  5'- --cGGCUggcCGCGgCgCACGUGGCCa- -3'
miRNA:   3'- cucCCGAaa-GCGCgG-GUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 59347 0.66 0.629938
Target:  5'- cGGcGGCgaggUCGCGCgCCGCGccgagcccgcGGCCGUg -3'
miRNA:   3'- cUC-CCGaa--AGCGCG-GGUGCa---------CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 29569 0.66 0.629938
Target:  5'- cGGGGGCgccgGCGCCgGCGccgccgcgccgGGCCGg -3'
miRNA:   3'- -CUCCCGaaagCGCGGgUGCa----------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 74368 0.66 0.660027
Target:  5'- -uGGGCUgcUGCGCCU-CGUGGCg-- -3'
miRNA:   3'- cuCCCGAaaGCGCGGGuGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 20243 0.66 0.669025
Target:  5'- aGGGGCUcgcccccgCGCGCgCCAUGUgcuauccuuuaaaGGCCGc -3'
miRNA:   3'- cUCCCGAaa------GCGCG-GGUGCA-------------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 120925 0.66 0.670024
Target:  5'- cGAGGGCggggcgggCGCGCggGCGUGGUgGc -3'
miRNA:   3'- -CUCCCGaaa-----GCGCGggUGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 46481 0.66 0.679991
Target:  5'- cAGGGCcUUCcaCGUCgcaGCGUGGCCGa -3'
miRNA:   3'- cUCCCGaAAGc-GCGGg--UGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 21397 0.66 0.679991
Target:  5'- gGAGGGgaUUCGgGCCgGCcgaggauucgGGCCGg -3'
miRNA:   3'- -CUCCCgaAAGCgCGGgUGca--------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 529 0.66 0.679991
Target:  5'- gGAGGGCaa--GUGCCCgacgcggggaACGUGGCgGc -3'
miRNA:   3'- -CUCCCGaaagCGCGGG----------UGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 113620 0.66 0.679991
Target:  5'- -uGGGCg--CGUugGCCCGCGcGGCCc- -3'
miRNA:   3'- cuCCCGaaaGCG--CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 8095 0.66 0.679991
Target:  5'- --cGGCgaggCGcCGaCCCACGUGGCCc- -3'
miRNA:   3'- cucCCGaaa-GC-GC-GGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 2095 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 28893 0.66 0.679991
Target:  5'- uGGGcGCUgcCGCacguggcgGCCUGCGUGGCCa- -3'
miRNA:   3'- cUCC-CGAaaGCG--------CGGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 7155 0.66 0.670024
Target:  5'- -cGGGCgugUCGCGCUCGCucgcccgGGCgGUu -3'
miRNA:   3'- cuCCCGaa-AGCGCGGGUGca-----CCGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.