miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 108525 1.06 0.00131
Target:  5'- cGAGGGCUUUCGCGCCCACGUGGCCGUc -3'
miRNA:   3'- -CUCCCGAAAGCGCGGGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 55750 0.76 0.171508
Target:  5'- --cGGC--UCGCGCCCGCGcGGCCGUg -3'
miRNA:   3'- cucCCGaaAGCGCGGGUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 52044 0.75 0.218999
Target:  5'- aGGGGCUcauuaUCGCGCCCGaaggcCGUGGCUGc -3'
miRNA:   3'- cUCCCGAa----AGCGCGGGU-----GCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 69551 0.74 0.252597
Target:  5'- -cGGGCguggaugCGCGUgugccuggggggCCACGUGGCCGUg -3'
miRNA:   3'- cuCCCGaaa----GCGCG------------GGUGCACCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 50670 0.73 0.270933
Target:  5'- gGAGGGCga-CGUGCCCuGCG-GGCUGUg -3'
miRNA:   3'- -CUCCCGaaaGCGCGGG-UGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 51377 0.73 0.277278
Target:  5'- cGAGGGCUgccUCGCcgguguCCCACGUGGCg-- -3'
miRNA:   3'- -CUCCCGAa--AGCGc-----GGGUGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 33649 0.73 0.297025
Target:  5'- cGA-GGCg--CGCGCgCGCGUGGCCGc -3'
miRNA:   3'- -CUcCCGaaaGCGCGgGUGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 43580 0.72 0.317846
Target:  5'- -cGGGCgacgCGCGCCCcaGCGUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-GCGCGGG--UGCACCGgca -5'
6376 5' -60.9 NC_001847.1 + 92006 0.72 0.339746
Target:  5'- -cGGGCgca-GCGCCCGCG-GGCCc- -3'
miRNA:   3'- cuCCCGaaagCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 354 0.72 0.339746
Target:  5'- -cGGGC-UUCGCGCCC-CGgGGCCc- -3'
miRNA:   3'- cuCCCGaAAGCGCGGGuGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 103167 0.72 0.339746
Target:  5'- -cGGGC-UUCGCGCCC-CGgGGCCc- -3'
miRNA:   3'- cuCCCGaAAGCGCGGGuGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 19353 0.72 0.339746
Target:  5'- -cGGGuCUUgcgCGCGCCCGacgGUGGCCa- -3'
miRNA:   3'- cuCCC-GAAa--GCGCGGGUg--CACCGGca -5'
6376 5' -60.9 NC_001847.1 + 103170 0.71 0.354943
Target:  5'- cGAGGGCg---GCGUCCACGgGGCCc- -3'
miRNA:   3'- -CUCCCGaaagCGCGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 94744 0.71 0.370613
Target:  5'- -cGGGCUUugggCGCGUCUugGccggGGCCGUc -3'
miRNA:   3'- cuCCCGAAa---GCGCGGGugCa---CCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 113491 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 10678 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 46918 0.71 0.370613
Target:  5'- gGGGGGCgcgUCGgGCCCGgGcuccgGGCCGc -3'
miRNA:   3'- -CUCCCGaa-AGCgCGGGUgCa----CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 74270 0.71 0.386749
Target:  5'- uGGGGCccgcgcgCGCGCUCGCGcUGGCCu- -3'
miRNA:   3'- cUCCCGaaa----GCGCGGGUGC-ACCGGca -5'
6376 5' -60.9 NC_001847.1 + 108540 0.71 0.386749
Target:  5'- gGAGGGCUUaCcUGCCCGCGgGGCgGUu -3'
miRNA:   3'- -CUCCCGAAaGcGCGGGUGCaCCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 5727 0.71 0.386749
Target:  5'- gGAGGGCUUaCcUGCCCGCGgGGCgGUu -3'
miRNA:   3'- -CUCCCGAAaGcGCGGGUGCaCCGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.