miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 354 0.72 0.339746
Target:  5'- -cGGGC-UUCGCGCCC-CGgGGCCc- -3'
miRNA:   3'- cuCCCGaAAGCGCGGGuGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 529 0.66 0.679991
Target:  5'- gGAGGGCaa--GUGCCCgacgcggggaACGUGGCgGc -3'
miRNA:   3'- -CUCCCGaaagCGCGGG----------UGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 1966 0.68 0.550277
Target:  5'- cGAGGGCagccCGCGCCCGCGcaGGUa-- -3'
miRNA:   3'- -CUCCCGaaa-GCGCGGGUGCa-CCGgca -5'
6376 5' -60.9 NC_001847.1 + 2095 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 2561 0.68 0.550277
Target:  5'- -cGGGCUgUCuucggcgcggGCGCCUGCGcGGCCGc -3'
miRNA:   3'- cuCCCGAaAG----------CGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 3425 0.67 0.579914
Target:  5'- cGGGGGCgccaggCGCaGCCCAgGgGGUCGa -3'
miRNA:   3'- -CUCCCGaaa---GCG-CGGGUgCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 3917 0.7 0.411804
Target:  5'- -cGGGCgccgguugCGCGCCCGCGcUGGCg-- -3'
miRNA:   3'- cuCCCGaaa-----GCGCGGGUGC-ACCGgca -5'
6376 5' -60.9 NC_001847.1 + 4184 0.7 0.43784
Target:  5'- -uGGGCcg-CGCGCCCGUG-GGCCGc -3'
miRNA:   3'- cuCCCGaaaGCGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 5030 0.68 0.521121
Target:  5'- cGAGGGCgcucUCGUacucgucccaGCCCGCGUcgcGGUCGg -3'
miRNA:   3'- -CUCCCGaa--AGCG----------CGGGUGCA---CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 5727 0.71 0.386749
Target:  5'- gGAGGGCUUaCcUGCCCGCGgGGCgGUu -3'
miRNA:   3'- -CUCCCGAAaGcGCGGGUGCaCCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 6970 0.66 0.639976
Target:  5'- cGGcGGCgcUUC-CGCCCGCG-GGCCGc -3'
miRNA:   3'- cUC-CCGa-AAGcGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 7155 0.66 0.670024
Target:  5'- -cGGGCgugUCGCGCUCGCucgcccgGGCgGUu -3'
miRNA:   3'- cuCCCGaa-AGCGCGGGUGca-----CCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 8095 0.66 0.679991
Target:  5'- --cGGCgaggCGcCGaCCCACGUGGCCc- -3'
miRNA:   3'- cucCCGaaa-GC-GC-GGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 10678 0.71 0.370613
Target:  5'- gGGGGGCUcgcccuccggUCGCGCCCggGCGcGGCCc- -3'
miRNA:   3'- -CUCCCGAa---------AGCGCGGG--UGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 11183 0.66 0.639976
Target:  5'- uGGGGCUgcCGCugGUCCGCGcggGGCUGg -3'
miRNA:   3'- cUCCCGAaaGCG--CGGGUGCa--CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 14142 0.66 0.619901
Target:  5'- cGGGGCc--CGCGCCUggGcGGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCGGGugCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 14428 0.66 0.659026
Target:  5'- cGGGGCUccgcuguUUgGCGCCgagCGCGcGGCCGc -3'
miRNA:   3'- cUCCCGA-------AAgCGCGG---GUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 14529 0.66 0.619901
Target:  5'- cGGcGGCgcUCGCuGCCCGCGgugccGCCGUa -3'
miRNA:   3'- cUC-CCGaaAGCG-CGGGUGCac---CGGCA- -5'
6376 5' -60.9 NC_001847.1 + 15537 0.66 0.679991
Target:  5'- -cGGGCUgcugGCGCCggugcgCGCGcGGCCGUc -3'
miRNA:   3'- cuCCCGAaag-CGCGG------GUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 15834 0.7 0.394988
Target:  5'- cGAGGGCgaaUUCGCGCCUuugcccucgGCGUucGCCGa -3'
miRNA:   3'- -CUCCCGa--AAGCGCGGG---------UGCAc-CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.