miRNA display CGI

Results 21 - 40 of 1550 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6377	3'	-60.3	NC_001847.1	+	1513	0.7	0.469948
	Target:  5'- aGCCGCgCGuagGCGGCcuCgGCGCgCGCg -3' miRNA:   3'- -CGGCG-GCucaUGCCGuuGgCGCG-GCG- -5'
6377	3'	-60.3	NC_001847.1	+	1564	0.68	0.623579
	Target:  5'- cGCCG-CGAGgccagcACGGCG--CGCGCCaGCg -3' miRNA:   3'- -CGGCgGCUCa-----UGCCGUugGCGCGG-CG- -5'
6377	3'	-60.3	NC_001847.1	+	1595	0.82	0.091726
	Target:  5'- cGCCGCuCGGGccagcgcGCGGCGcACUGCGCCGCg -3' miRNA:   3'- -CGGCG-GCUCa------UGCCGU-UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1726	0.78	0.171998
	Target:  5'- cGCCGCCGcGccGCGGcCAGCCGCG-CGCa -3' miRNA:   3'- -CGGCGGCuCa-UGCC-GUUGGCGCgGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1923	0.75	0.270191
	Target:  5'- cCCGCCGcGGcGCGGCGGCCacucGgGCCGCc -3' miRNA:   3'- cGGCGGC-UCaUGCCGUUGG----CgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1965	0.67	0.643408
	Target:  5'- cUCGCCGG--GCGGCGccGCCaGCGCCu- -3' miRNA:   3'- cGGCGGCUcaUGCCGU--UGG-CGCGGcg -5'
6377	3'	-60.3	NC_001847.1	+	2017	0.66	0.750188
	Target:  5'- aGCCGCa-GGUuuuccagcACGGC-GCCG-GCCGUg -3' miRNA:   3'- -CGGCGgcUCA--------UGCCGuUGGCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2064	0.79	0.144686
	Target:  5'- cGCCGCCGcagcGGUgGCGGCGAgCGCcCCGCg -3' miRNA:   3'- -CGGCGGC----UCA-UGCCGUUgGCGcGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2184	0.7	0.48826
	Target:  5'- cGCCGCCuGG-GCGGCGugCGgG-CGCa -3' miRNA:   3'- -CGGCGGcUCaUGCCGUugGCgCgGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2198	0.76	0.229035
	Target:  5'- cGCCGCgaccuCGGG-GCGGCAguaggccGCCaGCGCCGCg -3' miRNA:   3'- -CGGCG-----GCUCaUGCCGU-------UGG-CGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2284	0.79	0.152058
	Target:  5'- aGCCGCCGu---CGGCGGCgGgGCCGCc -3' miRNA:   3'- -CGGCGGCucauGCCGUUGgCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2329	0.72	0.37619
	Target:  5'- cGCgGgCGGGcagcgGCGGCucccGCCGCGCCGg -3' miRNA:   3'- -CGgCgGCUCa----UGCCGu---UGGCGCGGCg -5'
6377	3'	-60.3	NC_001847.1	+	2404	0.66	0.731325
	Target:  5'- cGCUcgGCCG----UGGCucGCUGCGCCGCu -3' miRNA:   3'- -CGG--CGGCucauGCCGu-UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2419	0.69	0.534446
	Target:  5'- cCC-CCGAGgggccccccGCGGCGGCCGgcagggcCGCCGCc -3' miRNA:   3'- cGGcGGCUCa--------UGCCGUUGGC-------GCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2449	0.69	0.54214
	Target:  5'- aGCCGCagcgagcucccgauCGAGcggGCGGCGGcgcccCCGCcGCCGUg -3' miRNA:   3'- -CGGCG--------------GCUCa--UGCCGUU-----GGCG-CGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2514	0.68	0.593898
	Target:  5'- gGCCGCCucGcGCuuuGCuGCCGgGCCGCg -3' miRNA:   3'- -CGGCGGcuCaUGc--CGuUGGCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2590	0.72	0.37619
	Target:  5'- gGCCGCCGcg-GCcGCAcgcgagcccGCCGCGCCGg -3' miRNA:   3'- -CGGCGGCucaUGcCGU---------UGGCGCGGCg -5'
6377	3'	-60.3	NC_001847.1	+	2645	0.66	0.721769
	Target:  5'- cGUCGCCGcuUGCGGCGcCUuCGCCcgGCg -3' miRNA:   3'- -CGGCGGCucAUGCCGUuGGcGCGG--CG- -5'
6377	3'	-60.3	NC_001847.1	+	2745	0.67	0.663203
	Target:  5'- gGCCcccgGCCcGGcGCGGCGgcGCCGgCGCCGg -3' miRNA:   3'- -CGG----CGGcUCaUGCCGU--UGGC-GCGGCg -5'
6377	3'	-60.3	NC_001847.1	+	2801	0.79	0.152058
	Target:  5'- gGCCG-CGAGcGCGGCcgccAGCCGCGCCGg -3' miRNA:   3'- -CGGCgGCUCaUGCCG----UUGGCGCGGCg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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