miRNA display CGI

Results 1 - 20 of 1550 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6377	3'	-60.3	NC_001847.1	+	102	0.69	0.554719
	Target:  5'- cGCCcCUGGGUcCGGCGccCCGCGCCcCg -3' miRNA:   3'- -CGGcGGCUCAuGCCGUu-GGCGCGGcG- -5'
6377	3'	-60.3	NC_001847.1	+	283	0.71	0.425782
	Target:  5'- gGCCGCCGAGcccgcGCgGGCGccguccCCGCGCCccGCc -3' miRNA:   3'- -CGGCGGCUCa----UG-CCGUu-----GGCGCGG--CG- -5'
6377	3'	-60.3	NC_001847.1	+	363	0.66	0.750188
	Target:  5'- cGCC-CCGGGgcCcGCccCgCGCGCCGCg -3' miRNA:   3'- -CGGcGGCUCauGcCGuuG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	427	0.66	0.702448
	Target:  5'- gGCgGgCGGGcgGCGGCGGCgGCGgCaGCa -3' miRNA:   3'- -CGgCgGCUCa-UGCCGUUGgCGCgG-CG- -5'
6377	3'	-60.3	NC_001847.1	+	479	0.68	0.584049
	Target:  5'- cGCCGUCauGGGUGCccgcGCcuCCGCGCCuGCu -3' miRNA:   3'- -CGGCGG--CUCAUGc---CGuuGGCGCGG-CG- -5'
6377	3'	-60.3	NC_001847.1	+	545	0.72	0.37619
	Target:  5'- -aCGCgGGGaacgugGCGGCGgacGCCaGCGCCGCg -3' miRNA:   3'- cgGCGgCUCa-----UGCCGU---UGG-CGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	584	0.72	0.384181
	Target:  5'- cGgCGCCGGGUccUGGCccuCCGCGgCCGCu -3' miRNA:   3'- -CgGCGGCUCAu-GCCGuu-GGCGC-GGCG- -5'
6377	3'	-60.3	NC_001847.1	+	774	0.69	0.545034
	Target:  5'- cGCCGCCG---GCGGCGccgGCCuCGUCGUc -3' miRNA:   3'- -CGGCGGCucaUGCCGU---UGGcGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	892	0.74	0.295896
	Target:  5'- -gCGCCGGGgccgccGCGGCcGCCGgcCGCCGCc -3' miRNA:   3'- cgGCGGCUCa-----UGCCGuUGGC--GCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	935	0.73	0.352899
	Target:  5'- aCCGCCGcccuCGGCccGCgCGCGCCGCu -3' miRNA:   3'- cGGCGGCucauGCCGu-UG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	992	0.71	0.408819
	Target:  5'- uCCGCCGcg-GCGGCGGCaCGCGCUcCa -3' miRNA:   3'- cGGCGGCucaUGCCGUUG-GCGCGGcG- -5'
6377	3'	-60.3	NC_001847.1	+	1022	0.72	0.400497
	Target:  5'- gGCCGCCGcccGCGGC----GCGCCGCa -3' miRNA:   3'- -CGGCGGCucaUGCCGuuggCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1049	0.69	0.525837
	Target:  5'- uGCuCGCCaGAGcaaGCGGCGgcGCCGgGCUGUu -3' miRNA:   3'- -CG-GCGG-CUCa--UGCCGU--UGGCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1090	0.75	0.270191
	Target:  5'- -aCGCCGGGcgccGCGGCcgcgGGCgGCGCCGCc -3' miRNA:   3'- cgGCGGCUCa---UGCCG----UUGgCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1139	0.66	0.6927
	Target:  5'- aCCGCCcgugacuGUACuGCcgauGCCGCGCgCGCu -3' miRNA:   3'- cGGCGGcu-----CAUGcCGu---UGGCGCG-GCG- -5'
6377	3'	-60.3	NC_001847.1	+	1189	0.72	0.392284
	Target:  5'- aCCGCCGcGgcCGGCAGCUcgucggGCGCCaGCu -3' miRNA:   3'- cGGCGGCuCauGCCGUUGG------CGCGG-CG- -5'
6377	3'	-60.3	NC_001847.1	+	1231	0.67	0.673069
	Target:  5'- cGCCGcCCGcAGgccaGGUAcACCG-GCCGCa -3' miRNA:   3'- -CGGC-GGC-UCaug-CCGU-UGGCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1264	0.68	0.60971
	Target:  5'- gGCgCGCCGAGcccccagcgguugGCGGCGcggugGCUG-GCCGCc -3' miRNA:   3'- -CG-GCGGCUCa------------UGCCGU-----UGGCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1374	0.8	0.130914
	Target:  5'- cCCGUCGAGcgcCGGCAGCaCGCGCUGCc -3' miRNA:   3'- cGGCGGCUCau-GCCGUUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	1472	0.72	0.400497
	Target:  5'- uGCCGCC----GCGGCAgaGCCGCaGCgGCg -3' miRNA:   3'- -CGGCGGcucaUGCCGU--UGGCG-CGgCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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