miRNA display CGI

Results 1 - 20 of 1550 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6377	3'	-60.3	NC_001847.1	+	108141	1.12	0.000732
	Target:  5'- cGCCGCCGAGUACGGCAACCGCGCCGCc -3' miRNA:   3'- -CGGCGGCUCAUGCCGUUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	2981	0.88	0.037748
	Target:  5'- cGCCGCCGGGgcCGGCGcuggaGCCGCGCgCGCu -3' miRNA:   3'- -CGGCGGCUCauGCCGU-----UGGCGCG-GCG- -5'
6377	3'	-60.3	NC_001847.1	+	5196	0.87	0.040861
	Target:  5'- cGCCG-CGAGcGCGGCAAgCGCGCCGCg -3' miRNA:   3'- -CGGCgGCUCaUGCCGUUgGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	47658	0.87	0.042399
	Target:  5'- aGCCGCCGAGcACGGCcaaguuuacgaagcgGGCgCGCGCCGCg -3' miRNA:   3'- -CGGCGGCUCaUGCCG---------------UUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	89498	0.87	0.043075
	Target:  5'- aCCGCCGcauUGCGGCAGCgCGCGCCGCg -3' miRNA:   3'- cGGCGGCuc-AUGCCGUUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	71007	0.87	0.043075
	Target:  5'- gGCCGCauguccAGUACGGCGGCCGCGCaCGCg -3' miRNA:   3'- -CGGCGgc----UCAUGCCGUUGGCGCG-GCG- -5'
6377	3'	-60.3	NC_001847.1	+	133750	0.86	0.046617
	Target:  5'- cGCCGCgCGAGUAcCGGCAGCgCGUGCUGCc -3' miRNA:   3'- -CGGCG-GCUCAU-GCCGUUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	45519	0.85	0.05316
	Target:  5'- cGCCGCCGG--GCGGCGcggacgggGCCGUGCCGCg -3' miRNA:   3'- -CGGCGGCUcaUGCCGU--------UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	32980	0.85	0.054572
	Target:  5'- gGCgGCUGAGcuUGCGGCgGGCCGCGCCGCc -3' miRNA:   3'- -CGgCGGCUC--AUGCCG-UUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	13114	0.85	0.056021
	Target:  5'- cGCgGCCGGGgcgcgcggGCGGC-GCCGCGCCGCc -3' miRNA:   3'- -CGgCGGCUCa-------UGCCGuUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	78294	0.85	0.060593
	Target:  5'- gGCCGCCGGGcgcagACGGCGcggcgcggcGCgCGCGCCGCg -3' miRNA:   3'- -CGGCGGCUCa----UGCCGU---------UG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	6326	0.85	0.060593
	Target:  5'- cGCgGCCacguacgcGGGUgccccgGCGGCAACCGCGCCGCg -3' miRNA:   3'- -CGgCGG--------CUCA------UGCCGUUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	14527	0.85	0.060593
	Target:  5'- cGCCGacgaCGAGUAcCGGCuggaguauGACCGCGCCGCa -3' miRNA:   3'- -CGGCg---GCUCAU-GCCG--------UUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	129654	0.84	0.062196
	Target:  5'- gGCgGUCGAGguUGCGGCGGCCGCuGCCGCc -3' miRNA:   3'- -CGgCGGCUC--AUGCCGUUGGCG-CGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	61445	0.84	0.06384
	Target:  5'- cGCCGCCGGGcGCGGCGaggcggucgcGCagcaGCGCCGCg -3' miRNA:   3'- -CGGCGGCUCaUGCCGU----------UGg---CGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	56818	0.84	0.070844
	Target:  5'- cGCCcaaGCCGGGcccGCGGCGcgcgcGCCGCGCCGCg -3' miRNA:   3'- -CGG---CGGCUCa--UGCCGU-----UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	41389	0.83	0.072707
	Target:  5'- gGCCGCCGc---CGGCAGCCGCGCgGCc -3' miRNA:   3'- -CGGCGGCucauGCCGUUGGCGCGgCG- -5'
6377	3'	-60.3	NC_001847.1	+	66003	0.83	0.074617
	Target:  5'- aCCGCCGGGcacgccACGGCGGCCGCGCUGg -3' miRNA:   3'- cGGCGGCUCa-----UGCCGUUGGCGCGGCg -5'
6377	3'	-60.3	NC_001847.1	+	29014	0.83	0.078584
	Target:  5'- cGCCGgCGGcaGCGGCGcCCGCGCCGCg -3' miRNA:   3'- -CGGCgGCUcaUGCCGUuGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	131827	0.83	0.078584
	Target:  5'- cGCCGgCGGcaGCGGCGcCCGCGCCGCg -3' miRNA:   3'- -CGGCgGCUcaUGCCGUuGGCGCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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