Results 1 - 20 of 1550 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6377 | 3' | -60.3 | NC_001847.1 | + | 61974 | 0.66 | 0.750188 |
Target: 5'- cGCCGCCGcGUcCGccuccuccGCccGgCGCGCCGCc -3' miRNA: 3'- -CGGCGGCuCAuGC--------CGu-UgGCGCGGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 4925 | 0.66 | 0.750188 |
Target: 5'- -gCGCCG---GCGGCAACaGCGCCc- -3' miRNA: 3'- cgGCGGCucaUGCCGUUGgCGCGGcg -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 3209 | 0.66 | 0.750188 |
Target: 5'- uCCGCC-AGcuCGcGCAGCCGCucgcgcGCCGCc -3' miRNA: 3'- cGGCGGcUCauGC-CGUUGGCG------CGGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 125462 | 0.66 | 0.750188 |
Target: 5'- aCgGgCGGGUcgGCGGCAGCuCGCGgCGg -3' miRNA: 3'- cGgCgGCUCA--UGCCGUUG-GCGCgGCg -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 55934 | 0.66 | 0.746444 |
Target: 5'- cGCgGCCGGcGUcgcgagcccagaauGCGcacccgcGCGACCGCGuCCGUa -3' miRNA: 3'- -CGgCGGCU-CA--------------UGC-------CGUUGGCGC-GGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 103126 | 0.66 | 0.740801 |
Target: 5'- cCCGCgCGAGcGCGG--GCCGcCGgCGCg -3' miRNA: 3'- cGGCG-GCUCaUGCCguUGGC-GCgGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 73428 | 0.66 | 0.740801 |
Target: 5'- aUUGCCGAGcGCccucuGGCGA-CGCGCgGCa -3' miRNA: 3'- cGGCGGCUCaUG-----CCGUUgGCGCGgCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 41504 | 0.66 | 0.740801 |
Target: 5'- -aUGaCCGAGcgugcagACGuccGCGGCCGCGCCGg -3' miRNA: 3'- cgGC-GGCUCa------UGC---CGUUGGCGCGGCg -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 97214 | 0.66 | 0.740801 |
Target: 5'- -gCGCCGAcaGCuGCuccAGCUGCGCCGUc -3' miRNA: 3'- cgGCGGCUcaUGcCG---UUGGCGCGGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 35539 | 0.66 | 0.750188 |
Target: 5'- uCCGCCGG--ACuGCAGCCccGCGCCa- -3' miRNA: 3'- cGGCGGCUcaUGcCGUUGG--CGCGGcg -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 43651 | 0.66 | 0.750188 |
Target: 5'- -gCGCgCGAGgGCucgGGUGGCC-CGCCGCa -3' miRNA: 3'- cgGCG-GCUCaUG---CCGUUGGcGCGGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 97624 | 0.66 | 0.750188 |
Target: 5'- aCCGUCGAGggugcguccagGCGGCGcGCCaaaaagGCGUCGUa -3' miRNA: 3'- cGGCGGCUCa----------UGCCGU-UGG------CGCGGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 110904 | 0.66 | 0.750188 |
Target: 5'- cCCGCCGc--GCGGCGGCUGaacguggagauCGCCGa -3' miRNA: 3'- cGGCGGCucaUGCCGUUGGC-----------GCGGCg -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 90708 | 0.66 | 0.750188 |
Target: 5'- cGCgCGCCGcgcccccGUGCGcgaacGCAGCCGCucGCgGCg -3' miRNA: 3'- -CG-GCGGCu------CAUGC-----CGUUGGCG--CGgCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 79851 | 0.66 | 0.750188 |
Target: 5'- cGCCGCUGGGacacgACuGCcGCCcguccgggcccgGCGCCGUu -3' miRNA: 3'- -CGGCGGCUCa----UGcCGuUGG------------CGCGGCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 67634 | 0.66 | 0.750188 |
Target: 5'- cGCCgGCgGAG-ACGGCGGCgGCuaCGa -3' miRNA: 3'- -CGG-CGgCUCaUGCCGUUGgCGcgGCg -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 47208 | 0.66 | 0.750188 |
Target: 5'- cGCuCaCCGcGUGC-GCGGCCGCGCCcaGCc -3' miRNA: 3'- -CG-GcGGCuCAUGcCGUUGGCGCGG--CG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 22600 | 0.66 | 0.750188 |
Target: 5'- cCCGCCcGGUcgcguggcaaGCGaGUGGCCGCGCagggCGCg -3' miRNA: 3'- cGGCGGcUCA----------UGC-CGUUGGCGCG----GCG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 9836 | 0.66 | 0.750188 |
Target: 5'- cGCCGCCauGAGccACGGcCAGCCuuGCCcCa -3' miRNA: 3'- -CGGCGG--CUCa-UGCC-GUUGGcgCGGcG- -5' |
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6377 | 3' | -60.3 | NC_001847.1 | + | 363 | 0.66 | 0.750188 |
Target: 5'- cGCC-CCGGGgcCcGCccCgCGCGCCGCg -3' miRNA: 3'- -CGGcGGCUCauGcCGuuG-GCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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