miRNA display CGI

Results 1 - 20 of 1550 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6377	3'	-60.3	NC_001847.1	+	5196	0.87	0.040861
	Target:  5'- cGCCG-CGAGcGCGGCAAgCGCGCCGCg -3' miRNA:   3'- -CGGCgGCUCaUGCCGUUgGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	104408	0.82	0.091726
	Target:  5'- cGCCGCuCGGGccagcgcGCGGCGcACUGCGCCGCg -3' miRNA:   3'- -CGGCG-GCUCa------UGCCGU-UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	132189	0.82	0.096553
	Target:  5'- uGCgCGCCGAG-GCGGCcGCCGCGCUGg -3' miRNA:   3'- -CG-GCGGCUCaUGCCGuUGGCGCGGCg -5'
6377	3'	-60.3	NC_001847.1	+	61974	0.66	0.750188
	Target:  5'- cGCCGCCGcGUcCGccuccuccGCccGgCGCGCCGCc -3' miRNA:   3'- -CGGCGGCuCAuGC--------CGu-UgGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	32980	0.85	0.054572
	Target:  5'- gGCgGCUGAGcuUGCGGCgGGCCGCGCCGCc -3' miRNA:   3'- -CGgCGGCUC--AUGCCG-UUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	13114	0.85	0.056021
	Target:  5'- cGCgGCCGGGgcgcgcggGCGGC-GCCGCGCCGCc -3' miRNA:   3'- -CGgCGGCUCa-------UGCCGuUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	6326	0.85	0.060593
	Target:  5'- cGCgGCCacguacgcGGGUgccccgGCGGCAACCGCGCCGCg -3' miRNA:   3'- -CGgCGG--------CUCA------UGCCGUUGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	56818	0.84	0.070844
	Target:  5'- cGCCcaaGCCGGGcccGCGGCGcgcgcGCCGCGCCGCg -3' miRNA:   3'- -CGG---CGGCUCa--UGCCGU-----UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	101001	0.83	0.080642
	Target:  5'- uGCCGCCGcg-GCGGCAguuacuGCCGcCGCCGCg -3' miRNA:   3'- -CGGCGGCucaUGCCGU------UGGC-GCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	29353	0.82	0.091726
	Target:  5'- gGCCGuuGAaaacaGCGGCGACCGCGCgGCg -3' miRNA:   3'- -CGGCggCUca---UGCCGUUGGCGCGgCG- -5'
6377	3'	-60.3	NC_001847.1	+	36373	0.83	0.082751
	Target:  5'- cGCCGCCGcGgcccgGGCAGCgCGCGCCGCg -3' miRNA:   3'- -CGGCGGCuCaug--CCGUUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	131827	0.83	0.078584
	Target:  5'- cGCCGgCGGcaGCGGCGcCCGCGCCGCg -3' miRNA:   3'- -CGGCgGCUcaUGCCGUuGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	89498	0.87	0.043075
	Target:  5'- aCCGCCGcauUGCGGCAGCgCGCGCCGCg -3' miRNA:   3'- cGGCGGCuc-AUGCCGUUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	43808	0.82	0.087129
	Target:  5'- cGCCgGUCGAGggcgACGGCGGCCGCuucuuuGCCGCg -3' miRNA:   3'- -CGG-CGGCUCa---UGCCGUUGGCG------CGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	133750	0.86	0.046617
	Target:  5'- cGCCGCgCGAGUAcCGGCAGCgCGUGCUGCc -3' miRNA:   3'- -CGGCG-GCUCAU-GCCGUUG-GCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	66003	0.83	0.074617
	Target:  5'- aCCGCCGGGcacgccACGGCGGCCGCGCUGg -3' miRNA:   3'- cGGCGGCUCa-----UGCCGUUGGCGCGGCg -5'
6377	3'	-60.3	NC_001847.1	+	132867	0.82	0.087129
	Target:  5'- cGCCGCCGAcgGCGGCuuccGCCGCguGCCGCc -3' miRNA:   3'- -CGGCGGCUcaUGCCGu---UGGCG--CGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	43002	0.82	0.096553
	Target:  5'- cGCCGCCGGGgg-GGCGcGCCGgGCCGCc -3' miRNA:   3'- -CGGCGGCUCaugCCGU-UGGCgCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	45519	0.85	0.05316
	Target:  5'- cGCCGCCGG--GCGGCGcggacgggGCCGUGCCGCg -3' miRNA:   3'- -CGGCGGCUcaUGCCGU--------UGGCGCGGCG- -5'
6377	3'	-60.3	NC_001847.1	+	14527	0.85	0.060593
	Target:  5'- cGCCGacgaCGAGUAcCGGCuggaguauGACCGCGCCGCa -3' miRNA:   3'- -CGGCg---GCUCAU-GCCG--------UUGGCGCGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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