miRNA display CGI


Results 41 - 60 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 5' -63.6 NC_001847.1 + 32156 0.66 0.547269
Target:  5'- cGCGcACGCCgcgaCGGCGUGcGCgGCGGa -3'
miRNA:   3'- cCGC-UGCGGag--GUCGCACcCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 126238 0.66 0.547269
Target:  5'- cGGCGGgGCgUCCGGgGUcgucggcgGGGCGUccGGg -3'
miRNA:   3'- -CCGCUgCGgAGGUCgCA--------CCCGCG--CCa -5'
6378 5' -63.6 NC_001847.1 + 32675 0.66 0.546317
Target:  5'- cGGCGGCGCgggcccgCUCgAGCuGUGcGGCGCcGUc -3'
miRNA:   3'- -CCGCUGCG-------GAGgUCG-CAC-CCGCGcCA- -5'
6378 5' -63.6 NC_001847.1 + 108742 0.66 0.546317
Target:  5'- uGCGACGCgacggcgUUCCugccGCGcUGGGCGcCGGa -3'
miRNA:   3'- cCGCUGCG-------GAGGu---CGC-ACCCGC-GCCa -5'
6378 5' -63.6 NC_001847.1 + 99504 0.66 0.544414
Target:  5'- aGGCGGCGCggUCCAGCGcUGgccccagcgccgccGGCgGCGGc -3'
miRNA:   3'- -CCGCUGCGg-AGGUCGC-AC--------------CCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 34736 0.66 0.537769
Target:  5'- aGGCGAacucCGCCUUCGacGCGgccgagcuGGCGCGGc -3'
miRNA:   3'- -CCGCU----GCGGAGGU--CGCac------CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 104894 0.66 0.537769
Target:  5'- cGGCGAgCGCC-CC-GCG-GGGCccgcGCGGc -3'
miRNA:   3'- -CCGCU-GCGGaGGuCGCaCCCG----CGCCa -5'
6378 5' -63.6 NC_001847.1 + 97869 0.66 0.537769
Target:  5'- aGGCGgcccGCGUC-CCAGuCG-GcGGCGCGGa -3'
miRNA:   3'- -CCGC----UGCGGaGGUC-GCaC-CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 2081 0.66 0.537769
Target:  5'- cGGCGAgCGCC-CC-GCG-GGGCccgcGCGGc -3'
miRNA:   3'- -CCGCU-GCGGaGGuCGCaCCCG----CGCCa -5'
6378 5' -63.6 NC_001847.1 + 45139 0.66 0.537769
Target:  5'- -uCGGCGCCUUCuGCG-GGGUGCa-- -3'
miRNA:   3'- ccGCUGCGGAGGuCGCaCCCGCGcca -5'
6378 5' -63.6 NC_001847.1 + 44291 0.66 0.537769
Target:  5'- cGGCGGCGCggCgCGGCGcggcGGGCcagcgccagaGCGGUg -3'
miRNA:   3'- -CCGCUGCGgaG-GUCGCa---CCCG----------CGCCA- -5'
6378 5' -63.6 NC_001847.1 + 100832 0.66 0.537769
Target:  5'- cGGCccgGGCGgCUCCGGCcaGGGC-CGGa -3'
miRNA:   3'- -CCG---CUGCgGAGGUCGcaCCCGcGCCa -5'
6378 5' -63.6 NC_001847.1 + 95093 0.66 0.537769
Target:  5'- uGGCGugGCggggGGCGcgauuggGGGCGCGGa -3'
miRNA:   3'- -CCGCugCGgaggUCGCa------CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 102987 0.66 0.537769
Target:  5'- cGCGcACGCCgUCgCGGCGU--GCGCGGg -3'
miRNA:   3'- cCGC-UGCGG-AG-GUCGCAccCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 119150 0.66 0.537769
Target:  5'- cGuCGGCGCCgcggCCGccGCG-GGGCgGCGGg -3'
miRNA:   3'- cC-GCUGCGGa---GGU--CGCaCCCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 52657 0.66 0.535876
Target:  5'- cGCGAccuaCGCCUUCGGCGgccccguggccgGGGC-CGGg -3'
miRNA:   3'- cCGCU----GCGGAGGUCGCa-----------CCCGcGCCa -5'
6378 5' -63.6 NC_001847.1 + 74986 0.66 0.535876
Target:  5'- gGGCGggGCGCCaggcucaguccgCCGGCGggcgggGGGCcaGCGGg -3'
miRNA:   3'- -CCGC--UGCGGa-----------GGUCGCa-----CCCG--CGCCa -5'
6378 5' -63.6 NC_001847.1 + 75909 0.66 0.528327
Target:  5'- cGGCGccauCGCCgacggCCGacGCGUGcaagcgcacGGCGCGGa -3'
miRNA:   3'- -CCGCu---GCGGa----GGU--CGCAC---------CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 13227 0.66 0.528327
Target:  5'- cGGCGAgcucCGCgauggCCAGCG-GGGCcacGCGGg -3'
miRNA:   3'- -CCGCU----GCGga---GGUCGCaCCCG---CGCCa -5'
6378 5' -63.6 NC_001847.1 + 29584 0.66 0.528327
Target:  5'- cGGCGcCGCCgcgCCGGgcCGgGGGC-CGGUg -3'
miRNA:   3'- -CCGCuGCGGa--GGUC--GCaCCCGcGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.