miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 74273 0.7 0.903136
Target:  5'- -cCGGGcgCgGCCGCCCUcgcgcugGACGCCCu -3'
miRNA:   3'- gaGCUUa-GgCGGUGGGAua-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 77448 0.7 0.903136
Target:  5'- gUCGAGagCGCggCACCCgc-GGCGCCCa -3'
miRNA:   3'- gAGCUUagGCG--GUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 49613 0.7 0.9095
Target:  5'- gCUCGGcgCgCGCCACCCg---GCGCUg -3'
miRNA:   3'- -GAGCUuaG-GCGGUGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 7790 0.7 0.915613
Target:  5'- gCUCGGGccCCGCCGCCCcugccgcGGCAgCCg -3'
miRNA:   3'- -GAGCUUa-GGCGGUGGGaua----UUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 79985 0.7 0.915613
Target:  5'- -gCGAG-CCGCUGCgCggcgGUGACGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUGgGa---UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 63244 0.7 0.921473
Target:  5'- -cCGggUCCGCCGCUgc--AGCGCCa -3'
miRNA:   3'- gaGCuuAGGCGGUGGgauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 120985 0.7 0.921473
Target:  5'- -gCGcggCCGUCGCCCUAgcggcCGCCCa -3'
miRNA:   3'- gaGCuuaGGCGGUGGGAUauu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 89626 0.7 0.921473
Target:  5'- uUCGAcuuUUCGgccuuuuuucCCACCCUGU-ACGCCCa -3'
miRNA:   3'- gAGCUu--AGGC----------GGUGGGAUAuUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 114336 0.69 0.927079
Target:  5'- -gCGAAagCGCCGCCgaA--GCACCCg -3'
miRNA:   3'- gaGCUUagGCGGUGGgaUauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 81524 0.69 0.927079
Target:  5'- gCUCGGGcggugccaccCCGCCGCCCgccaccGugGCCCg -3'
miRNA:   3'- -GAGCUUa---------GGCGGUGGGaua---UugUGGG- -5'
6379 3' -51.5 NC_001847.1 + 53175 0.69 0.927079
Target:  5'- gCUCGGGcgCUGCgACCCggcUGUGGCGCgCCg -3'
miRNA:   3'- -GAGCUUa-GGCGgUGGG---AUAUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 90237 0.69 0.927079
Target:  5'- gUCGcggCCGCCGCcgcggCCUGUGACGCgCu -3'
miRNA:   3'- gAGCuuaGGCGGUG-----GGAUAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 62229 0.69 0.932431
Target:  5'- -cCGAcgCCGCCgaccGCCUcGUGGCGCgCCa -3'
miRNA:   3'- gaGCUuaGGCGG----UGGGaUAUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 112634 0.69 0.932431
Target:  5'- ------cCCGCUGCCCUGccagAGCGCCCc -3'
miRNA:   3'- gagcuuaGGCGGUGGGAUa---UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 95427 0.69 0.932431
Target:  5'- cCUCGucUUCGCgGCCCUGgacgagGGgACCCu -3'
miRNA:   3'- -GAGCuuAGGCGgUGGGAUa-----UUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 29234 0.69 0.937528
Target:  5'- -aCG-AUCCGCCACUgcAUGGC-CCCg -3'
miRNA:   3'- gaGCuUAGGCGGUGGgaUAUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 16699 0.69 0.937528
Target:  5'- -aCGAggCCGCCACCagcaggAGC-CCCa -3'
miRNA:   3'- gaGCUuaGGCGGUGGgaua--UUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 74447 0.69 0.937528
Target:  5'- -aCGGGcgCCGCUACCagGUGACGCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGgaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 913 0.69 0.937528
Target:  5'- -cCGg--CCGCCGCCCgccGGCGCCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 45251 0.69 0.937528
Target:  5'- cCUCGGGcgCCGCguCCCcgAaGGCGCCCc -3'
miRNA:   3'- -GAGCUUa-GGCGguGGGa-UaUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.