miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 61377 0.67 0.9809
Target:  5'- gCUCGuagcggcccgcgCCGCCGCCCggcgcuuggAACugCCc -3'
miRNA:   3'- -GAGCuua---------GGCGGUGGGaua------UUGugGG- -5'
6379 3' -51.5 NC_001847.1 + 6241 0.67 0.980017
Target:  5'- -cCGggUCgGCCACUUUAaGACugCg -3'
miRNA:   3'- gaGCuuAGgCGGUGGGAUaUUGugGg -5'
6379 3' -51.5 NC_001847.1 + 94468 0.67 0.980017
Target:  5'- uCUCGAGUCC---ACCUUcgAGCACCa -3'
miRNA:   3'- -GAGCUUAGGcggUGGGAuaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 92411 0.67 0.980017
Target:  5'- -cCGcc-CCGCCGCCCgcgcggcCGCCCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauauu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 116960 0.67 0.980017
Target:  5'- -gCGGugcUCCgGCUGCCCUGcGACGCCg -3'
miRNA:   3'- gaGCUu--AGG-CGGUGGGAUaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 48646 0.67 0.980017
Target:  5'- -gCGGGgcgCCGCCGCCCcc--GCAgCCu -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGauauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 120819 0.67 0.980017
Target:  5'- uCUCugc-CCGCCGCUCgAUGAgGCCCc -3'
miRNA:   3'- -GAGcuuaGGCGGUGGGaUAUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 40902 0.67 0.980017
Target:  5'- -gCGAG-CCGCUccacgGCCCgcgcgGGCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGG-----UGGGaua--UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 33664 0.67 0.977679
Target:  5'- cCUCGGucgcuagCgCGCCGCCCUu--GCGgCCg -3'
miRNA:   3'- -GAGCUua-----G-GCGGUGGGAuauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 120807 0.67 0.977679
Target:  5'- --aGGcgCCGCCACC-----ACGCCCg -3'
miRNA:   3'- gagCUuaGGCGGUGGgauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 72644 0.67 0.977679
Target:  5'- -gCGGcuguggCCGCCACCCcgcggcCGCCCg -3'
miRNA:   3'- gaGCUua----GGCGGUGGGauauu-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 9942 0.67 0.977679
Target:  5'- gCUCG---CCGCgGCCCg--GGCGCCUu -3'
miRNA:   3'- -GAGCuuaGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 76396 0.67 0.977679
Target:  5'- gUCGcggCCGCCGCCgCUGUcGgGCCg -3'
miRNA:   3'- gAGCuuaGGCGGUGG-GAUAuUgUGGg -5'
6379 3' -51.5 NC_001847.1 + 90197 0.67 0.977679
Target:  5'- -gCGGcgcgCCGUCGCCCagcccgAGCGCCCc -3'
miRNA:   3'- gaGCUua--GGCGGUGGGaua---UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 132889 0.67 0.975144
Target:  5'- -cCGAGggCCGCCGCgucaCCUGggaGACGCUCa -3'
miRNA:   3'- gaGCUUa-GGCGGUG----GGAUa--UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 134717 0.67 0.975144
Target:  5'- -cCGccgCCGCCGCCCc----CGCCCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 7827 0.67 0.975144
Target:  5'- cCUCGGcgCCgGUCGCCgUGUcuccGGCACCg -3'
miRNA:   3'- -GAGCUuaGG-CGGUGGgAUA----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 81277 0.67 0.975144
Target:  5'- --aGAGaCgGCCGCCCcacAGCACCCc -3'
miRNA:   3'- gagCUUaGgCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 78781 0.67 0.975144
Target:  5'- -cCGAgGUCgUGCCGCCC----GCGCCCg -3'
miRNA:   3'- gaGCU-UAG-GCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 92519 0.67 0.974074
Target:  5'- gUCGGcgCUGCCGCCCcccuccgcggcGGCGCCg -3'
miRNA:   3'- gAGCUuaGGCGGUGGGaua--------UUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.