miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 38819 0.66 0.984141
Target:  5'- ------cCCGCCGCCCaccGACACCg -3'
miRNA:   3'- gagcuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 83555 0.66 0.984141
Target:  5'- uUC-AcgCCGCCGCUCUcgGgcuucugguagGCGCCCg -3'
miRNA:   3'- gAGcUuaGGCGGUGGGAuaU-----------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 16320 0.66 0.984141
Target:  5'- cCUCGGcUCCG-CGCCCUA-GACgACCg -3'
miRNA:   3'- -GAGCUuAGGCgGUGGGAUaUUG-UGGg -5'
6379 3' -51.5 NC_001847.1 + 1538 0.66 0.984141
Target:  5'- gCUUGug-CCGCCcaagcccgcccGCCCgAUAgcGCGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGG-----------UGGGaUAU--UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 44650 0.66 0.984141
Target:  5'- aUCGGAggCUGCUGCCCcgccuGCACCg -3'
miRNA:   3'- gAGCUUa-GGCGGUGGGauau-UGUGGg -5'
6379 3' -51.5 NC_001847.1 + 54061 0.66 0.984141
Target:  5'- -gCGAggCCGCCGCCa----GCGCCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGgauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 92243 0.66 0.984141
Target:  5'- uCUCGAG-CCGCCugCagcucGCGCUCu -3'
miRNA:   3'- -GAGCUUaGGCGGugGgauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 123820 0.66 0.983373
Target:  5'- -cCGGcgCCaGCCGCCCgccggccucggcgGgcGCGCCCa -3'
miRNA:   3'- gaGCUuaGG-CGGUGGGa------------UauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 104969 0.66 0.982169
Target:  5'- gUCGGccagGUCCGCCgagcGCCac---GCACCCa -3'
miRNA:   3'- gAGCU----UAGGCGG----UGGgauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 65246 0.66 0.982169
Target:  5'- -gCGcuuuUCCGCCACCCgg----GCCCg -3'
miRNA:   3'- gaGCuu--AGGCGGUGGGauauugUGGG- -5'
6379 3' -51.5 NC_001847.1 + 117272 0.66 0.982169
Target:  5'- -gCGGggCCGCCGuuUUGgGGCGCCCc -3'
miRNA:   3'- gaGCUuaGGCGGUggGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 129772 0.66 0.982169
Target:  5'- gCUCGGA-CCGCCggagccuggGCCCggccGCGCCg -3'
miRNA:   3'- -GAGCUUaGGCGG---------UGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 80103 0.66 0.982169
Target:  5'- -aCGAAcgCgGCCACCUgcgcaaacGCGCCCg -3'
miRNA:   3'- gaGCUUa-GgCGGUGGGauau----UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 24300 0.66 0.982169
Target:  5'- uCUCGAuuAUCCGCCAUUggAUuuuuUGCCCg -3'
miRNA:   3'- -GAGCU--UAGGCGGUGGgaUAuu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 122021 0.66 0.982169
Target:  5'- -gCGGcgCggCGCCGCCCgc--GCGCCCc -3'
miRNA:   3'- gaGCUuaG--GCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 130349 0.66 0.982169
Target:  5'- cCUCGuccagcaugCCGUCAUgCUGgAACGCCCc -3'
miRNA:   3'- -GAGCuua------GGCGGUGgGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 80595 0.66 0.982169
Target:  5'- cCUCcGcgCCGCC-CCCgccgucuGCGCCCc -3'
miRNA:   3'- -GAGcUuaGGCGGuGGGauau---UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 111757 0.66 0.982169
Target:  5'- -gUGAGcUCCGcCCACCCagcccCACCCu -3'
miRNA:   3'- gaGCUU-AGGC-GGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 127113 0.66 0.982169
Target:  5'- uCUCGAuuAUCCGCCAUUggAUuuuuUGCCCg -3'
miRNA:   3'- -GAGCU--UAGGCGGUGGgaUAuu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20039 0.66 0.981543
Target:  5'- -gCGg--CCGCCGCCCUGggcgcgggcaaaaauGCGCUCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGAUau-------------UGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.