miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 61967 0.66 0.988642
Target:  5'- -cCGAcUCCGCCGCCgCguccgccuccucCGCCCg -3'
miRNA:   3'- gaGCUuAGGCGGUGG-Gauauu-------GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 123360 0.66 0.987584
Target:  5'- gUCGAAagCGCCacuGCCCgcc--CGCCCu -3'
miRNA:   3'- gAGCUUagGCGG---UGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 117320 0.66 0.987584
Target:  5'- -cCGAcGUgCGCCGCaCUggcAUGGCGCCCu -3'
miRNA:   3'- gaGCU-UAgGCGGUG-GGa--UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 43217 0.66 0.987584
Target:  5'- gCUCGGcgCCGUUGCCCgGUGGCGgUg -3'
miRNA:   3'- -GAGCUuaGGCGGUGGGaUAUUGUgGg -5'
6379 3' -51.5 NC_001847.1 + 114429 0.66 0.987584
Target:  5'- -gCG-GUCCGCCAgcggggccucgUCCUcGUAGCACUCg -3'
miRNA:   3'- gaGCuUAGGCGGU-----------GGGA-UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 116146 0.66 0.987584
Target:  5'- -cCGAGggCGCCGCCCgu--GCGCUa -3'
miRNA:   3'- gaGCUUagGCGGUGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 83478 0.66 0.987584
Target:  5'- -gCGua--CGCCGCCCUGUugcgggcgcAGCGCCg -3'
miRNA:   3'- gaGCuuagGCGGUGGGAUA---------UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 38108 0.66 0.987584
Target:  5'- -cCGGAcgCCGCUGCCCggcggguGCGCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGGauau---UGUGGg -5'
6379 3' -51.5 NC_001847.1 + 126479 0.66 0.987584
Target:  5'- aCUCGGGgaucuugCgCGCCAUCgUcugGGCGCCCg -3'
miRNA:   3'- -GAGCUUa------G-GCGGUGGgAua-UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 62023 0.66 0.987427
Target:  5'- -gCGAGcacggcggcuaccUCCGCCACCCg--GGC-CUCa -3'
miRNA:   3'- gaGCUU-------------AGGCGGUGGGauaUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 102150 0.66 0.985943
Target:  5'- -cCGGccgcUCCgGCCGCCCUGcc-CGCCCc -3'
miRNA:   3'- gaGCUu---AGG-CGGUGGGAUauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 70731 0.66 0.985943
Target:  5'- -gCGAGgacagCCGCUGCCa-AUAGCGCCg -3'
miRNA:   3'- gaGCUUa----GGCGGUGGgaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 77490 0.66 0.985943
Target:  5'- ------aCCGCCuGCCCgacGGCGCCCa -3'
miRNA:   3'- gagcuuaGGCGG-UGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 82149 0.66 0.985943
Target:  5'- gUCGGcUCCGCCAUgCCUGc-GCGuCCCc -3'
miRNA:   3'- gAGCUuAGGCGGUG-GGAUauUGU-GGG- -5'
6379 3' -51.5 NC_001847.1 + 97925 0.66 0.985943
Target:  5'- gUCGuccgcgCCGCCGCCaagcGGCACCg -3'
miRNA:   3'- gAGCuua---GGCGGUGGgauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 31357 0.66 0.985943
Target:  5'- uUCuacacgCCGCCggcggagcgcGCCCUG-AGCACCCa -3'
miRNA:   3'- gAGcuua--GGCGG----------UGGGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 66288 0.66 0.985943
Target:  5'- -cCGGcgCaCGCCGCCgCgcucGCGCCCg -3'
miRNA:   3'- gaGCUuaG-GCGGUGG-GauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 73797 0.66 0.985943
Target:  5'- -gCGGggCUGCCugCCgGUGggcuaggcGCGCCCg -3'
miRNA:   3'- gaGCUuaGGCGGugGGaUAU--------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 83555 0.66 0.984141
Target:  5'- uUC-AcgCCGCCGCUCUcgGgcuucugguagGCGCCCg -3'
miRNA:   3'- gAGcUuaGGCGGUGGGAuaU-----------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 16320 0.66 0.984141
Target:  5'- cCUCGGcUCCG-CGCCCUA-GACgACCg -3'
miRNA:   3'- -GAGCUuAGGCgGUGGGAUaUUG-UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.