Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 3' | -51.5 | NC_001847.1 | + | 105490 | 0.71 | 0.881846 |
Target: 5'- cCUCGGAcccguccUCCGgguCCGCCCgc-GGCGCCCc -3' miRNA: 3'- -GAGCUU-------AGGC---GGUGGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 10430 | 0.71 | 0.867668 |
Target: 5'- uUCGcg-CUGCCGCCCcc--GCGCCCg -3' miRNA: 3'- gAGCuuaGGCGGUGGGauauUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 92789 | 0.73 | 0.799634 |
Target: 5'- aCUCGAAgaguacgUCGCCGCCgCgcacacgGGCGCCCa -3' miRNA: 3'- -GAGCUUa------GGCGGUGG-Gaua----UUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 99149 | 0.74 | 0.721369 |
Target: 5'- -gCGcuAUCCGCgCGCCUUGUGGCGCCa -3' miRNA: 3'- gaGCu-UAGGCG-GUGGGAUAUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 90237 | 0.69 | 0.927079 |
Target: 5'- gUCGcggCCGCCGCcgcggCCUGUGACGCgCu -3' miRNA: 3'- gAGCuuaGGCGGUG-----GGAUAUUGUGgG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 11534 | 0.71 | 0.888968 |
Target: 5'- -cCGAGUuuGCCGCCUUGgcugGGCuugcaaaGCCCg -3' miRNA: 3'- gaGCUUAggCGGUGGGAUa---UUG-------UGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 118304 | 0.72 | 0.843645 |
Target: 5'- cCUCGAG--CGCCGCCCc--GAUGCCCg -3' miRNA: 3'- -GAGCUUagGCGGUGGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 19007 | 0.76 | 0.637873 |
Target: 5'- cCUCGGG-CCGCgCGCCCc--AGCGCCCg -3' miRNA: 3'- -GAGCUUaGGCG-GUGGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 27508 | 0.71 | 0.885437 |
Target: 5'- cCUCGg--CCGCCGCCgCggcggcggcgggGACGCCCg -3' miRNA: 3'- -GAGCuuaGGCGGUGG-Gaua---------UUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 55714 | 0.78 | 0.503165 |
Target: 5'- uUCGugugcCCGCCGCCCUcgGGCGCCa -3' miRNA: 3'- gAGCuua--GGCGGUGGGAuaUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 131278 | 0.71 | 0.859876 |
Target: 5'- -aCGGG-CCGCCGCCgCUGgAGgGCCCg -3' miRNA: 3'- gaGCUUaGGCGGUGG-GAUaUUgUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 47003 | 0.71 | 0.882569 |
Target: 5'- -gCGAAUCUGCUGCCCgucaaaaAUGGCGCgCg -3' miRNA: 3'- gaGCUUAGGCGGUGGGa------UAUUGUGgG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 63590 | 0.72 | 0.832652 |
Target: 5'- uUCGA--CCGCCACCCcGUGGCcgcgugccucugcuACCCc -3' miRNA: 3'- gAGCUuaGGCGGUGGGaUAUUG--------------UGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 23488 | 0.73 | 0.808795 |
Target: 5'- gCUCGGcgCgCGUCGCUacagGUGGCACCCa -3' miRNA: 3'- -GAGCUuaG-GCGGUGGga--UAUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 29891 | 0.73 | 0.771223 |
Target: 5'- -gCGGAgugcCUGCCGCCCgaaguGCGCCCg -3' miRNA: 3'- gaGCUUa---GGCGGUGGGauau-UGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 76752 | 0.74 | 0.741626 |
Target: 5'- -aCGAAgagCUGCUGCCCgccGGCACCCg -3' miRNA: 3'- gaGCUUa--GGCGGUGGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 74447 | 0.69 | 0.937528 |
Target: 5'- -aCGGGcgCCGCUACCagGUGACGCCg -3' miRNA: 3'- gaGCUUa-GGCGGUGGgaUAUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 95427 | 0.69 | 0.932431 |
Target: 5'- cCUCGucUUCGCgGCCCUGgacgagGGgACCCu -3' miRNA: 3'- -GAGCuuAGGCGgUGGGAUa-----UUgUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 7790 | 0.7 | 0.915613 |
Target: 5'- gCUCGGGccCCGCCGCCCcugccgcGGCAgCCg -3' miRNA: 3'- -GAGCUUa-GGCGGUGGGaua----UUGUgGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 102920 | 0.7 | 0.896524 |
Target: 5'- -cUGggUCCGgCGCCCc---GCGCCCc -3' miRNA: 3'- gaGCuuAGGCgGUGGGauauUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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