miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 70926 0.8 0.408451
Target:  5'- uUCGcg-CCGCCGCCCg--GGCACCCc -3'
miRNA:   3'- gAGCuuaGGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 33019 0.7 0.903136
Target:  5'- -gCGGAgugCCGCCGCCCUcuc-CGCCg -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGAuauuGUGGg -5'
6379 3' -51.5 NC_001847.1 + 10375 0.7 0.902486
Target:  5'- gCUCGggUCgCcgcucgcggcgggGCCGCUUUAUGACgGCCCg -3'
miRNA:   3'- -GAGCuuAG-G-------------CGGUGGGAUAUUG-UGGG- -5'
6379 3' -51.5 NC_001847.1 + 23525 0.71 0.867668
Target:  5'- -aCGAggUCGCCGCCCgugAaGACGCCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGGa--UaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 56792 0.72 0.817785
Target:  5'- gCUCGAggggcuGUUCGCCGCCgc--GGCGCCCa -3'
miRNA:   3'- -GAGCU------UAGGCGGUGGgauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 16699 0.69 0.937528
Target:  5'- -aCGAggCCGCCACCagcaggAGC-CCCa -3'
miRNA:   3'- gaGCUuaGGCGGUGGgaua--UUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 89626 0.7 0.921473
Target:  5'- uUCGAcuuUUCGgccuuuuuucCCACCCUGU-ACGCCCa -3'
miRNA:   3'- gAGCUu--AGGC----------GGUGGGAUAuUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20115 0.73 0.799634
Target:  5'- -cCGGAcUCGCCGCCCUcAUGGCGCgCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGA-UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 54322 0.71 0.882569
Target:  5'- cCUCGcuGAUCCGgCGCCUcac-GCGCCCg -3'
miRNA:   3'- -GAGC--UUAGGCgGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 105490 0.71 0.881846
Target:  5'- cCUCGGAcccguccUCCGgguCCGCCCgc-GGCGCCCc -3'
miRNA:   3'- -GAGCUU-------AGGC---GGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 34921 0.74 0.741626
Target:  5'- aUCGAuGUCCGCCGCCgCUGgcGCAgCUg -3'
miRNA:   3'- gAGCU-UAGGCGGUGG-GAUauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 97133 0.74 0.741626
Target:  5'- -gUGuAGUCCGCCACCgUGgc-CACCCg -3'
miRNA:   3'- gaGC-UUAGGCGGUGGgAUauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 94970 0.69 0.937528
Target:  5'- aCUCGcagagCCGCgACCag--GACGCCCa -3'
miRNA:   3'- -GAGCuua--GGCGgUGGgauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 29234 0.69 0.937528
Target:  5'- -aCG-AUCCGCCACUgcAUGGC-CCCg -3'
miRNA:   3'- gaGCuUAGGCGGUGGgaUAUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 102920 0.7 0.896524
Target:  5'- -cUGggUCCGgCGCCCc---GCGCCCc -3'
miRNA:   3'- gaGCuuAGGCgGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 52692 0.72 0.835218
Target:  5'- -cCGGGcCCGCCGCgCCUGgagccaAGCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUG-GGAUa-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 63676 0.72 0.826596
Target:  5'- gCUCGcggCCGCCAugccCCCggaAGCGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGGU----GGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 76752 0.74 0.741626
Target:  5'- -aCGAAgagCUGCUGCCCgccGGCACCCg -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 14193 0.71 0.870721
Target:  5'- -cUGggUCCGCCcacaucagccaccacGCCCgc--GCGCCCg -3'
miRNA:   3'- gaGCuuAGGCGG---------------UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 130105 0.71 0.882569
Target:  5'- gUCGGAgCCGCCGCCggu---CGCCCg -3'
miRNA:   3'- gAGCUUaGGCGGUGGgauauuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.