miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 32438 0.72 0.817785
Target:  5'- -gCGGGccuUUCGCCGCCCgcccGGCGCCCu -3'
miRNA:   3'- gaGCUU---AGGCGGUGGGaua-UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 56792 0.72 0.817785
Target:  5'- gCUCGAggggcuGUUCGCCGCCgc--GGCGCCCa -3'
miRNA:   3'- -GAGCU------UAGGCGGUGGgauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 129622 0.72 0.817785
Target:  5'- -aCGAGcgUCGCCGCCCUA-GAC-CCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGGAUaUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 113183 0.72 0.817785
Target:  5'- -cCGGcgCCGCgGCCC---AGCGCCCg -3'
miRNA:   3'- gaGCUuaGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 63676 0.72 0.826596
Target:  5'- gCUCGcggCCGCCAugccCCCggaAGCGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGGU----GGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 63590 0.72 0.832652
Target:  5'- uUCGA--CCGCCACCCcGUGGCcgcgugccucugcuACCCc -3'
miRNA:   3'- gAGCUuaGGCGGUGGGaUAUUG--------------UGGG- -5'
6379 3' -51.5 NC_001847.1 + 52692 0.72 0.835218
Target:  5'- -cCGGGcCCGCCGCgCCUGgagccaAGCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUG-GGAUa-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 53211 0.72 0.843645
Target:  5'- cCUCGAcgCCGUCAagCUG-AACGCCCu -3'
miRNA:   3'- -GAGCUuaGGCGGUggGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 118304 0.72 0.843645
Target:  5'- cCUCGAG--CGCCGCCCc--GAUGCCCg -3'
miRNA:   3'- -GAGCUUagGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 98143 0.72 0.851867
Target:  5'- gCUCGAGcgcgCCGCCGCCgCUcgGcgcGgGCCCg -3'
miRNA:   3'- -GAGCUUa---GGCGGUGG-GAuaU---UgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 100289 0.71 0.857496
Target:  5'- cCUCGAuggcugCCGUCGCCCgcUGcgcgcucgccuccaGCGCCCg -3'
miRNA:   3'- -GAGCUua----GGCGGUGGGauAU--------------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 131278 0.71 0.859876
Target:  5'- -aCGGG-CCGCCGCCgCUGgAGgGCCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGG-GAUaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 28465 0.71 0.859876
Target:  5'- -aCGGG-CCGCCGCCgCUGgAGgGCCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGG-GAUaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 75975 0.71 0.859876
Target:  5'- cCUCGAccgCCGCC-CCCUGgccaagcGGCGCCg -3'
miRNA:   3'- -GAGCUua-GGCGGuGGGAUa------UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 23525 0.71 0.867668
Target:  5'- -aCGAggUCGCCGCCCgugAaGACGCCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGGa--UaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 100722 0.71 0.867668
Target:  5'- -cCGAAguacuucuUCCGCCGCCCcc-AGCGCCg -3'
miRNA:   3'- gaGCUU--------AGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 49088 0.71 0.867668
Target:  5'- gCUCGcAUCCGUgGCCCcc-AGCGCCUc -3'
miRNA:   3'- -GAGCuUAGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 10430 0.71 0.867668
Target:  5'- uUCGcg-CUGCCGCCCcc--GCGCCCg -3'
miRNA:   3'- gAGCuuaGGCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 14193 0.71 0.870721
Target:  5'- -cUGggUCCGCCcacaucagccaccacGCCCgc--GCGCCCg -3'
miRNA:   3'- gaGCuuAGGCGG---------------UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 131700 0.71 0.875234
Target:  5'- gUCGAcuUCCGCCucgaccCCCUGggcuGCGCCUg -3'
miRNA:   3'- gAGCUu-AGGCGGu-----GGGAUau--UGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.