miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 107479 1.13 0.003876
Target:  5'- gCUCGAAUCCGCCACCCUAUAACACCCg -3'
miRNA:   3'- -GAGCUUAGGCGGUGGGAUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 70926 0.8 0.408451
Target:  5'- uUCGcg-CCGCCGCCCg--GGCACCCc -3'
miRNA:   3'- gAGCuuaGGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 55714 0.78 0.503165
Target:  5'- uUCGugugcCCGCCGCCCUcgGGCGCCa -3'
miRNA:   3'- gAGCuua--GGCGGUGGGAuaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 19007 0.76 0.637873
Target:  5'- cCUCGGG-CCGCgCGCCCc--AGCGCCCg -3'
miRNA:   3'- -GAGCUUaGGCG-GUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 99149 0.74 0.721369
Target:  5'- -gCGcuAUCCGCgCGCCUUGUGGCGCCa -3'
miRNA:   3'- gaGCu-UAGGCG-GUGGGAUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 54293 0.74 0.731543
Target:  5'- cCUCGAcgcgcgCCGCCGCCCg--GAUcuGCCCc -3'
miRNA:   3'- -GAGCUua----GGCGGUGGGauaUUG--UGGG- -5'
6379 3' -51.5 NC_001847.1 + 109677 0.74 0.731543
Target:  5'- -cCGAGUaCGCCACCCUGcgcGCGCUCg -3'
miRNA:   3'- gaGCUUAgGCGGUGGGAUau-UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 97133 0.74 0.741626
Target:  5'- -gUGuAGUCCGCCACCgUGgc-CACCCg -3'
miRNA:   3'- gaGC-UUAGGCGGUGGgAUauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 34921 0.74 0.741626
Target:  5'- aUCGAuGUCCGCCGCCgCUGgcGCAgCUg -3'
miRNA:   3'- gAGCU-UAGGCGGUGG-GAUauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 76752 0.74 0.741626
Target:  5'- -aCGAAgagCUGCUGCCCgccGGCACCCg -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 49274 0.74 0.751607
Target:  5'- gCUCaGGUCCG-CGCCgUAUAACAUCCg -3'
miRNA:   3'- -GAGcUUAGGCgGUGGgAUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 29891 0.73 0.771223
Target:  5'- -gCGGAgugcCUGCCGCCCgaaguGCGCCCg -3'
miRNA:   3'- gaGCUUa---GGCGGUGGGauau-UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 101595 0.73 0.780839
Target:  5'- -gCGGcGUCUGCCGCCuCUucGGCGCCCg -3'
miRNA:   3'- gaGCU-UAGGCGGUGG-GAuaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 100541 0.73 0.799634
Target:  5'- cCUCGGcgcgCCGCCGCgCC---AGCGCCCg -3'
miRNA:   3'- -GAGCUua--GGCGGUG-GGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 72222 0.73 0.799634
Target:  5'- -aCGAGgagCCGCCcgcggGCCCcg-AGCACCCg -3'
miRNA:   3'- gaGCUUa--GGCGG-----UGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20115 0.73 0.799634
Target:  5'- -cCGGAcUCGCCGCCCUcAUGGCGCgCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGA-UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 92789 0.73 0.799634
Target:  5'- aCUCGAAgaguacgUCGCCGCCgCgcacacgGGCGCCCa -3'
miRNA:   3'- -GAGCUUa------GGCGGUGG-Gaua----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 81681 0.73 0.808795
Target:  5'- gUCGAucGUCuCGCCGCCgUAgAGCGCCa -3'
miRNA:   3'- gAGCU--UAG-GCGGUGGgAUaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 23488 0.73 0.808795
Target:  5'- gCUCGGcgCgCGUCGCUacagGUGGCACCCa -3'
miRNA:   3'- -GAGCUuaG-GCGGUGGga--UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 57058 0.73 0.808795
Target:  5'- aUCGAGcccggCCGCCGCCCggacuccuGCGCCg -3'
miRNA:   3'- gAGCUUa----GGCGGUGGGauau----UGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.