miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 107 0.7 0.896524
Target:  5'- -cUGggUCCGgCGCCCc---GCGCCCc -3'
miRNA:   3'- gaGCuuAGGCgGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 913 0.69 0.937528
Target:  5'- -cCGg--CCGCCGCCCgccGGCGCCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 1013 0.67 0.972406
Target:  5'- gCUCcaccaggCCGCCGCCCgc-GGCGCgCCg -3'
miRNA:   3'- -GAGcuua---GGCGGUGGGauaUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 1112 0.68 0.955413
Target:  5'- -gCGGcgCCGCCGCggCCUccAGCACCa -3'
miRNA:   3'- gaGCUuaGGCGGUG--GGAuaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 1538 0.66 0.984141
Target:  5'- gCUUGug-CCGCCcaagcccgcccGCCCgAUAgcGCGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGG-----------UGGGaUAU--UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 1827 0.67 0.969456
Target:  5'- gCUCacGUCCgGCgCGCCCguccAGCGCCCg -3'
miRNA:   3'- -GAGcuUAGG-CG-GUGGGaua-UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 2029 0.68 0.951312
Target:  5'- cCUCgGggUCCGCgAUCUgc-GACAUCCa -3'
miRNA:   3'- -GAG-CuuAGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 2677 0.71 0.881846
Target:  5'- cCUCGGAcccguccUCCGgguCCGCCCgc-GGCGCCCc -3'
miRNA:   3'- -GAGCUU-------AGGC---GGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 4524 0.68 0.966289
Target:  5'- uUCGGccUCGgCGCCCUcgGugGCCCc -3'
miRNA:   3'- gAGCUuaGGCgGUGGGAuaUugUGGG- -5'
6379 3' -51.5 NC_001847.1 + 4536 0.67 0.969456
Target:  5'- cCUCGcggCgGCCGCCCgcggGUGGCGCg- -3'
miRNA:   3'- -GAGCuuaGgCGGUGGGa---UAUUGUGgg -5'
6379 3' -51.5 NC_001847.1 + 4919 0.68 0.966289
Target:  5'- gUCGuuagggCCGCCGCgCUucccGCGCCCu -3'
miRNA:   3'- gAGCuua---GGCGGUGgGAuau-UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 6241 0.67 0.980017
Target:  5'- -cCGggUCgGCCACUUUAaGACugCg -3'
miRNA:   3'- gaGCuuAGgCGGUGGGAUaUUGugGg -5'
6379 3' -51.5 NC_001847.1 + 7790 0.7 0.915613
Target:  5'- gCUCGGGccCCGCCGCCCcugccgcGGCAgCCg -3'
miRNA:   3'- -GAGCUUa-GGCGGUGGGaua----UUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 7827 0.67 0.975144
Target:  5'- cCUCGGcgCCgGUCGCCgUGUcuccGGCACCg -3'
miRNA:   3'- -GAGCUuaGG-CGGUGGgAUA----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 8944 0.66 0.989073
Target:  5'- -gUGAGcUCCGcCCACCCagccccCACCCu -3'
miRNA:   3'- gaGCUU-AGGC-GGUGGGauauu-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 9942 0.67 0.977679
Target:  5'- gCUCG---CCGCgGCCCg--GGCGCCUu -3'
miRNA:   3'- -GAGCuuaGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 10375 0.7 0.902486
Target:  5'- gCUCGggUCgCcgcucgcggcgggGCCGCUUUAUGACgGCCCg -3'
miRNA:   3'- -GAGCuuAG-G-------------CGGUGGGAUAUUG-UGGG- -5'
6379 3' -51.5 NC_001847.1 + 10430 0.71 0.867668
Target:  5'- uUCGcg-CUGCCGCCCcc--GCGCCCg -3'
miRNA:   3'- gAGCuuaGGCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 11420 0.68 0.962896
Target:  5'- -cCGAugCCGCCGCCgCUGcUGcCGCCCc -3'
miRNA:   3'- gaGCUuaGGCGGUGG-GAU-AUuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 11534 0.71 0.888968
Target:  5'- -cCGAGUuuGCCGCCUUGgcugGGCuugcaaaGCCCg -3'
miRNA:   3'- gaGCUUAggCGGUGGGAUa---UUG-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.