miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 135095 0.69 0.942373
Target:  5'- -cCGAAauuUCCGCCcCCCcccaaaAACACCCc -3'
miRNA:   3'- gaGCUU---AGGCGGuGGGaua---UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 134717 0.67 0.975144
Target:  5'- -cCGccgCCGCCGCCCc----CGCCCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 132889 0.67 0.975144
Target:  5'- -cCGAGggCCGCCGCgucaCCUGggaGACGCUCa -3'
miRNA:   3'- gaGCUUa-GGCGGUG----GGAUa--UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 131700 0.71 0.875234
Target:  5'- gUCGAcuUCCGCCucgaccCCCUGggcuGCGCCUg -3'
miRNA:   3'- gAGCUu-AGGCGGu-----GGGAUau--UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 131278 0.71 0.859876
Target:  5'- -aCGGG-CCGCCGCCgCUGgAGgGCCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGG-GAUaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 131159 0.68 0.955413
Target:  5'- -gCGGggCCGCgCGCCCgggcccccGGCGCCCu -3'
miRNA:   3'- gaGCUuaGGCG-GUGGGaua-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 130349 0.66 0.982169
Target:  5'- cCUCGuccagcaugCCGUCAUgCUGgAACGCCCc -3'
miRNA:   3'- -GAGCuua------GGCGGUGgGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 130105 0.71 0.882569
Target:  5'- gUCGGAgCCGCCGCCggu---CGCCCg -3'
miRNA:   3'- gAGCUUaGGCGGUGGgauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 129772 0.66 0.982169
Target:  5'- gCUCGGA-CCGCCggagccuggGCCCggccGCGCCg -3'
miRNA:   3'- -GAGCUUaGGCGG---------UGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 129622 0.72 0.817785
Target:  5'- -aCGAGcgUCGCCGCCCUA-GAC-CCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGGAUaUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 129260 0.66 0.99042
Target:  5'- -aCGGcgCgGCCGCCCUGcgcgcAGCGCUg -3'
miRNA:   3'- gaGCUuaGgCGGUGGGAUa----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 129219 0.68 0.951312
Target:  5'- -cCGucGUCCGCCGCCCauc--CGCCUa -3'
miRNA:   3'- gaGCu-UAGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 127395 0.68 0.959272
Target:  5'- gUCGGGcuugcccuggCCGCCGCCUcc--GCGCCCg -3'
miRNA:   3'- gAGCUUa---------GGCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 127113 0.66 0.982169
Target:  5'- uCUCGAuuAUCCGCCAUUggAUuuuuUGCCCg -3'
miRNA:   3'- -GAGCU--UAGGCGGUGGgaUAuu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 126479 0.66 0.987584
Target:  5'- aCUCGGGgaucuugCgCGCCAUCgUcugGGCGCCCg -3'
miRNA:   3'- -GAGCUUa------G-GCGGUGGgAua-UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 125646 0.66 0.99003
Target:  5'- gCUCGggUCCGCUcgucgcggcgcgcaGCUCUucguauacGUGGuCAUCCg -3'
miRNA:   3'- -GAGCuuAGGCGG--------------UGGGA--------UAUU-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 123820 0.66 0.983373
Target:  5'- -cCGGcgCCaGCCGCCCgccggccucggcgGgcGCGCCCa -3'
miRNA:   3'- gaGCUuaGG-CGGUGGGa------------UauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 123360 0.66 0.987584
Target:  5'- gUCGAAagCGCCacuGCCCgcc--CGCCCu -3'
miRNA:   3'- gAGCUUagGCGG---UGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 122439 0.66 0.989073
Target:  5'- -cCGAGgcaCCgGCCugCCU---GCACCCc -3'
miRNA:   3'- gaGCUUa--GG-CGGugGGAuauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 122021 0.66 0.982169
Target:  5'- -gCGGcgCggCGCCGCCCgc--GCGCCCc -3'
miRNA:   3'- gaGCUuaG--GCGGUGGGauauUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.