miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 121879 0.68 0.966289
Target:  5'- cCUgGAcgCgGCCugCCUGcgAAcCGCCCg -3'
miRNA:   3'- -GAgCUuaGgCGGugGGAUa-UU-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 120985 0.7 0.921473
Target:  5'- -gCGcggCCGUCGCCCUAgcggcCGCCCa -3'
miRNA:   3'- gaGCuuaGGCGGUGGGAUauu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 120819 0.67 0.980017
Target:  5'- uCUCugc-CCGCCGCUCgAUGAgGCCCc -3'
miRNA:   3'- -GAGcuuaGGCGGUGGGaUAUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 120807 0.67 0.977679
Target:  5'- --aGGcgCCGCCACC-----ACGCCCg -3'
miRNA:   3'- gagCUuaGGCGGUGGgauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 120574 0.71 0.875234
Target:  5'- --aGAG-CCGCgCGCCCgccAGCACCCg -3'
miRNA:   3'- gagCUUaGGCG-GUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 119955 0.68 0.963245
Target:  5'- -gCGggUCCGCUGCCCagaaagccaaaaaAGCugCCg -3'
miRNA:   3'- gaGCuuAGGCGGUGGGaua----------UUGugGG- -5'
6379 3' -51.5 NC_001847.1 + 119798 0.69 0.942843
Target:  5'- cCUCGAAgccaucacgcaccccCCGcCCGCCCccgcuACGCCCg -3'
miRNA:   3'- -GAGCUUa--------------GGC-GGUGGGauau-UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 119567 0.66 0.99003
Target:  5'- -aCGAG-CCGCCGCCUgccgccgAUGGggguucccccgcgcCACCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGa------UAUU--------------GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 118445 0.67 0.972406
Target:  5'- gCUCGucUgCGCCugCCggcu-CGCCCg -3'
miRNA:   3'- -GAGCuuAgGCGGugGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 118304 0.72 0.843645
Target:  5'- cCUCGAG--CGCCGCCCc--GAUGCCCg -3'
miRNA:   3'- -GAGCUUagGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 118181 0.68 0.966289
Target:  5'- cCUC-AAUCUGCCGCCCggc--CGCUCu -3'
miRNA:   3'- -GAGcUUAGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 117320 0.66 0.987584
Target:  5'- -cCGAcGUgCGCCGCaCUggcAUGGCGCCCu -3'
miRNA:   3'- gaGCU-UAgGCGGUG-GGa--UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 117272 0.66 0.982169
Target:  5'- -gCGGggCCGCCGuuUUGgGGCGCCCc -3'
miRNA:   3'- gaGCUuaGGCGGUggGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 117255 0.67 0.972406
Target:  5'- --aGcAcgCCGCCGCCCgccc-CGCCCg -3'
miRNA:   3'- gagC-UuaGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 116960 0.67 0.980017
Target:  5'- -gCGGugcUCCgGCUGCCCUGcGACGCCg -3'
miRNA:   3'- gaGCUu--AGG-CGGUGGGAUaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 116146 0.66 0.987584
Target:  5'- -cCGAGggCGCCGCCCgu--GCGCUa -3'
miRNA:   3'- gaGCUUagGCGGUGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 114680 0.71 0.882569
Target:  5'- gUCGAcagCCGCCGCggCCUGcugGACGCCUu -3'
miRNA:   3'- gAGCUua-GGCGGUG--GGAUa--UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 114429 0.66 0.987584
Target:  5'- -gCG-GUCCGCCAgcggggccucgUCCUcGUAGCACUCg -3'
miRNA:   3'- gaGCuUAGGCGGU-----------GGGA-UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 114336 0.69 0.927079
Target:  5'- -gCGAAagCGCCGCCgaA--GCACCCg -3'
miRNA:   3'- gaGCUUagGCGGUGGgaUauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 113183 0.72 0.817785
Target:  5'- -cCGGcgCCGCgGCCC---AGCGCCCg -3'
miRNA:   3'- gaGCUuaGGCGgUGGGauaUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.