miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 20039 0.66 0.981543
Target:  5'- -gCGg--CCGCCGCCCUGggcgcgggcaaaaauGCGCUCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGAUau-------------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 38108 0.66 0.987584
Target:  5'- -cCGGAcgCCGCUGCCCggcggguGCGCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGGauau---UGUGGg -5'
6379 3' -51.5 NC_001847.1 + 66926 0.66 0.99042
Target:  5'- -gCGGccccgCCGCgGCCCgu--GCGCCCc -3'
miRNA:   3'- gaGCUua---GGCGgUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 79411 0.66 0.99042
Target:  5'- -gCGAG-CCGgaCCACC--GUGGCGCCCg -3'
miRNA:   3'- gaGCUUaGGC--GGUGGgaUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 125646 0.66 0.99003
Target:  5'- gCUCGggUCCGCUcgucgcggcgcgcaGCUCUucguauacGUGGuCAUCCg -3'
miRNA:   3'- -GAGCuuAGGCGG--------------UGGGA--------UAUU-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 48596 0.66 0.989073
Target:  5'- cCUCGGcGUCCcccuuaagccgcGCCGCCagcacgcgGGCGCCCa -3'
miRNA:   3'- -GAGCU-UAGG------------CGGUGGgaua----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 12276 0.66 0.989073
Target:  5'- -gCGAGUCCaaGCgCGCCCaccAGCACCa -3'
miRNA:   3'- gaGCUUAGG--CG-GUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 8944 0.66 0.989073
Target:  5'- -gUGAGcUCCGcCCACCCagccccCACCCu -3'
miRNA:   3'- gaGCUU-AGGC-GGUGGGauauu-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 82398 0.66 0.989073
Target:  5'- -gCGGG-CCGCUugUCcggGACGCCCa -3'
miRNA:   3'- gaGCUUaGGCGGugGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 126479 0.66 0.987584
Target:  5'- aCUCGGGgaucuugCgCGCCAUCgUcugGGCGCCCg -3'
miRNA:   3'- -GAGCUUa------G-GCGGUGGgAua-UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 123360 0.66 0.987584
Target:  5'- gUCGAAagCGCCacuGCCCgcc--CGCCCu -3'
miRNA:   3'- gAGCUUagGCGG---UGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 129260 0.66 0.99042
Target:  5'- -aCGGcgCgGCCGCCCUGcgcgcAGCGCUg -3'
miRNA:   3'- gaGCUuaGgCGGUGGGAUa----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 97925 0.66 0.985943
Target:  5'- gUCGuccgcgCCGCCGCCaagcGGCACCg -3'
miRNA:   3'- gAGCuua---GGCGGUGGgauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 82149 0.66 0.985943
Target:  5'- gUCGGcUCCGCCAUgCCUGc-GCGuCCCc -3'
miRNA:   3'- gAGCUuAGGCGGUG-GGAUauUGU-GGG- -5'
6379 3' -51.5 NC_001847.1 + 77490 0.66 0.985943
Target:  5'- ------aCCGCCuGCCCgacGGCGCCCa -3'
miRNA:   3'- gagcuuaGGCGG-UGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 70731 0.66 0.985943
Target:  5'- -gCGAGgacagCCGCUGCCa-AUAGCGCCg -3'
miRNA:   3'- gaGCUUa----GGCGGUGGgaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 83555 0.66 0.984141
Target:  5'- uUC-AcgCCGCCGCUCUcgGgcuucugguagGCGCCCg -3'
miRNA:   3'- gAGcUuaGGCGGUGGGAuaU-----------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 38819 0.66 0.984141
Target:  5'- ------cCCGCCGCCCaccGACACCg -3'
miRNA:   3'- gagcuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 16163 0.66 0.984141
Target:  5'- gUCGcAcgCCGCCGCgCUcgucgcGUAGCGCaCCu -3'
miRNA:   3'- gAGC-UuaGGCGGUGgGA------UAUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 107422 0.66 0.984141
Target:  5'- -gCGGcuUCCGCCGCU----GACGCCCu -3'
miRNA:   3'- gaGCUu-AGGCGGUGGgauaUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.