miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 48596 0.66 0.989073
Target:  5'- cCUCGGcGUCCcccuuaagccgcGCCGCCagcacgcgGGCGCCCa -3'
miRNA:   3'- -GAGCU-UAGG------------CGGUGGgaua----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 125646 0.66 0.99003
Target:  5'- gCUCGggUCCGCUcgucgcggcgcgcaGCUCUucguauacGUGGuCAUCCg -3'
miRNA:   3'- -GAGCuuAGGCGG--------------UGGGA--------UAUU-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 79411 0.66 0.99042
Target:  5'- -gCGAG-CCGgaCCACC--GUGGCGCCCg -3'
miRNA:   3'- gaGCUUaGGC--GGUGGgaUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 66926 0.66 0.99042
Target:  5'- -gCGGccccgCCGCgGCCCgu--GCGCCCc -3'
miRNA:   3'- gaGCUua---GGCGgUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 70731 0.66 0.985943
Target:  5'- -gCGAGgacagCCGCUGCCa-AUAGCGCCg -3'
miRNA:   3'- gaGCUUa----GGCGGUGGgaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 83555 0.66 0.984141
Target:  5'- uUC-AcgCCGCCGCUCUcgGgcuucugguagGCGCCCg -3'
miRNA:   3'- gAGcUuaGGCGGUGGGAuaU-----------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 38819 0.66 0.984141
Target:  5'- ------cCCGCCGCCCaccGACACCg -3'
miRNA:   3'- gagcuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 119567 0.66 0.99003
Target:  5'- -aCGAG-CCGCCGCCUgccgccgAUGGggguucccccgcgcCACCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGa------UAUU--------------GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 114429 0.66 0.987584
Target:  5'- -gCG-GUCCGCCAgcggggccucgUCCUcGUAGCACUCg -3'
miRNA:   3'- gaGCuUAGGCGGU-----------GGGA-UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 62023 0.66 0.987427
Target:  5'- -gCGAGcacggcggcuaccUCCGCCACCCg--GGC-CUCa -3'
miRNA:   3'- gaGCUU-------------AGGCGGUGGGauaUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 24300 0.66 0.982169
Target:  5'- uCUCGAuuAUCCGCCAUUggAUuuuuUGCCCg -3'
miRNA:   3'- -GAGCU--UAGGCGGUGGgaUAuu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 122021 0.66 0.982169
Target:  5'- -gCGGcgCggCGCCGCCCgc--GCGCCCc -3'
miRNA:   3'- gaGCUuaG--GCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 129772 0.66 0.982169
Target:  5'- gCUCGGA-CCGCCggagccuggGCCCggccGCGCCg -3'
miRNA:   3'- -GAGCUUaGGCGG---------UGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 129260 0.66 0.99042
Target:  5'- -aCGGcgCgGCCGCCCUGcgcgcAGCGCUg -3'
miRNA:   3'- gaGCUuaGgCGGUGGGAUa----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 130349 0.66 0.982169
Target:  5'- cCUCGuccagcaugCCGUCAUgCUGgAACGCCCc -3'
miRNA:   3'- -GAGCuua------GGCGGUGgGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 80595 0.66 0.982169
Target:  5'- cCUCcGcgCCGCC-CCCgccgucuGCGCCCc -3'
miRNA:   3'- -GAGcUuaGGCGGuGGGauau---UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 104969 0.66 0.982169
Target:  5'- gUCGGccagGUCCGCCgagcGCCac---GCACCCa -3'
miRNA:   3'- gAGCU----UAGGCGG----UGGgauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 123820 0.66 0.983373
Target:  5'- -cCGGcgCCaGCCGCCCgccggccucggcgGgcGCGCCCa -3'
miRNA:   3'- gaGCUuaGG-CGGUGGGa------------UauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 107422 0.66 0.984141
Target:  5'- -gCGGcuUCCGCCGCU----GACGCCCu -3'
miRNA:   3'- gaGCUu-AGGCGGUGGgauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 16163 0.66 0.984141
Target:  5'- gUCGcAcgCCGCCGCgCUcgucgcGUAGCGCaCCu -3'
miRNA:   3'- gAGC-UuaGGCGGUGgGA------UAUUGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.