miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 10430 0.71 0.867668
Target:  5'- uUCGcg-CUGCCGCCCcc--GCGCCCg -3'
miRNA:   3'- gAGCuuaGGCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 14193 0.71 0.870721
Target:  5'- -cUGggUCCGCCcacaucagccaccacGCCCgc--GCGCCCg -3'
miRNA:   3'- gaGCuuAGGCGG---------------UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 47003 0.71 0.882569
Target:  5'- -gCGAAUCUGCUGCCCgucaaaaAUGGCGCgCg -3'
miRNA:   3'- gaGCUUAGGCGGUGGGa------UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 54322 0.71 0.882569
Target:  5'- cCUCGcuGAUCCGgCGCCUcac-GCGCCCg -3'
miRNA:   3'- -GAGC--UUAGGCgGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 38196 0.71 0.882569
Target:  5'- -aCGAAgagcgCCuGCCGCCCgcgGAgGCCCg -3'
miRNA:   3'- gaGCUUa----GG-CGGUGGGauaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 101440 0.71 0.875234
Target:  5'- gCUCGGccacgcgCCGCCGCgCCgcgAGCGCCUg -3'
miRNA:   3'- -GAGCUua-----GGCGGUG-GGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 100722 0.71 0.867668
Target:  5'- -cCGAAguacuucuUCCGCCGCCCcc-AGCGCCg -3'
miRNA:   3'- gaGCUU--------AGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 49088 0.71 0.867668
Target:  5'- gCUCGcAUCCGUgGCCCcc-AGCGCCUc -3'
miRNA:   3'- -GAGCuUAGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 75975 0.71 0.859876
Target:  5'- cCUCGAccgCCGCC-CCCUGgccaagcGGCGCCg -3'
miRNA:   3'- -GAGCUua-GGCGGuGGGAUa------UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 28465 0.71 0.859876
Target:  5'- -aCGGG-CCGCCGCCgCUGgAGgGCCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGG-GAUaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 130105 0.71 0.882569
Target:  5'- gUCGGAgCCGCCGCCggu---CGCCCg -3'
miRNA:   3'- gAGCUUaGGCGGUGGgauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 100289 0.71 0.857496
Target:  5'- cCUCGAuggcugCCGUCGCCCgcUGcgcgcucgccuccaGCGCCCg -3'
miRNA:   3'- -GAGCUua----GGCGGUGGGauAU--------------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 114680 0.71 0.882569
Target:  5'- gUCGAcagCCGCCGCggCCUGcugGACGCCUu -3'
miRNA:   3'- gAGCUua-GGCGGUG--GGAUa--UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 27508 0.71 0.885437
Target:  5'- cCUCGg--CCGCCGCCgCggcggcggcgggGACGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGGUGG-Gaua---------UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 79985 0.7 0.915613
Target:  5'- -gCGAG-CCGCUGCgCggcgGUGACGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUGgGa---UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 74273 0.7 0.903136
Target:  5'- -cCGGGcgCgGCCGCCCUcgcgcugGACGCCCu -3'
miRNA:   3'- gaGCUUa-GgCGGUGGGAua-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 107 0.7 0.896524
Target:  5'- -cUGggUCCGgCGCCCc---GCGCCCc -3'
miRNA:   3'- gaGCuuAGGCgGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 49613 0.7 0.9095
Target:  5'- gCUCGGcgCgCGCCACCCg---GCGCUg -3'
miRNA:   3'- -GAGCUuaG-GCGGUGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 120985 0.7 0.921473
Target:  5'- -gCGcggCCGUCGCCCUAgcggcCGCCCa -3'
miRNA:   3'- gaGCuuaGGCGGUGGGAUauu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 53637 0.7 0.896524
Target:  5'- aCUCGcGUCCGCgACaaagaCCg--GGCACCCg -3'
miRNA:   3'- -GAGCuUAGGCGgUG-----GGauaUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.