miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 53175 0.69 0.927079
Target:  5'- gCUCGGGcgCUGCgACCCggcUGUGGCGCgCCg -3'
miRNA:   3'- -GAGCUUa-GGCGgUGGG---AUAUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 118304 0.72 0.843645
Target:  5'- cCUCGAG--CGCCGCCCc--GAUGCCCg -3'
miRNA:   3'- -GAGCUUagGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 19007 0.76 0.637873
Target:  5'- cCUCGGG-CCGCgCGCCCc--AGCGCCCg -3'
miRNA:   3'- -GAGCUUaGGCG-GUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 89626 0.7 0.921473
Target:  5'- uUCGAcuuUUCGgccuuuuuucCCACCCUGU-ACGCCCa -3'
miRNA:   3'- gAGCUu--AGGC----------GGUGGGAUAuUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 55714 0.78 0.503165
Target:  5'- uUCGugugcCCGCCGCCCUcgGGCGCCa -3'
miRNA:   3'- gAGCuua--GGCGGUGGGAuaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 94648 0.68 0.962896
Target:  5'- aCUCGAGUaCgGCCugCCcGUGacggaagaGCACCUc -3'
miRNA:   3'- -GAGCUUA-GgCGGugGGaUAU--------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 76752 0.74 0.741626
Target:  5'- -aCGAAgagCUGCUGCCCgccGGCACCCg -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 42793 0.68 0.962896
Target:  5'- cCUCGcgg-CGCCGCCCUGUgccGugGCCa -3'
miRNA:   3'- -GAGCuuagGCGGUGGGAUA---UugUGGg -5'
6379 3' -51.5 NC_001847.1 + 103925 0.68 0.955413
Target:  5'- -gCGGcgCCGCCGCggCCUccAGCACCa -3'
miRNA:   3'- gaGCUuaGGCGGUG--GGAuaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 46779 0.69 0.946967
Target:  5'- -cCG-GUCCGCCgcGCCCgc--GCGCCCc -3'
miRNA:   3'- gaGCuUAGGCGG--UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 42662 0.69 0.942373
Target:  5'- gUCGAAgaggCCGCCGCCgCgcUGGCcaucgaccgGCCCu -3'
miRNA:   3'- gAGCUUa---GGCGGUGG-GauAUUG---------UGGG- -5'
6379 3' -51.5 NC_001847.1 + 74447 0.69 0.937528
Target:  5'- -aCGGGcgCCGCUACCagGUGACGCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGgaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 95427 0.69 0.932431
Target:  5'- cCUCGucUUCGCgGCCCUGgacgagGGgACCCu -3'
miRNA:   3'- -GAGCuuAGGCGgUGGGAUa-----UUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 10375 0.7 0.902486
Target:  5'- gCUCGggUCgCcgcucgcggcgggGCCGCUUUAUGACgGCCCg -3'
miRNA:   3'- -GAGCuuAG-G-------------CGGUGGGAUAUUG-UGGG- -5'
6379 3' -51.5 NC_001847.1 + 27508 0.71 0.885437
Target:  5'- cCUCGg--CCGCCGCCgCggcggcggcgggGACGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGGUGG-Gaua---------UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 105490 0.71 0.881846
Target:  5'- cCUCGGAcccguccUCCGgguCCGCCCgc-GGCGCCCc -3'
miRNA:   3'- -GAGCUU-------AGGC---GGUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 10430 0.71 0.867668
Target:  5'- uUCGcg-CUGCCGCCCcc--GCGCCCg -3'
miRNA:   3'- gAGCuuaGGCGGUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 63590 0.72 0.832652
Target:  5'- uUCGA--CCGCCACCCcGUGGCcgcgugccucugcuACCCc -3'
miRNA:   3'- gAGCUuaGGCGGUGGGaUAUUG--------------UGGG- -5'
6379 3' -51.5 NC_001847.1 + 23488 0.73 0.808795
Target:  5'- gCUCGGcgCgCGUCGCUacagGUGGCACCCa -3'
miRNA:   3'- -GAGCUuaG-GCGGUGGga--UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 29891 0.73 0.771223
Target:  5'- -gCGGAgugcCUGCCGCCCgaaguGCGCCCg -3'
miRNA:   3'- gaGCUUa---GGCGGUGGGauau-UGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.