miRNA display CGI


Results 41 - 60 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 27508 0.71 0.885437
Target:  5'- cCUCGg--CCGCCGCCgCggcggcggcgggGACGCCCg -3'
miRNA:   3'- -GAGCuuaGGCGGUGG-Gaua---------UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 28346 0.68 0.955413
Target:  5'- -gCGGggCCGCgCGCCCgggcccccGGCGCCCu -3'
miRNA:   3'- gaGCUuaGGCG-GUGGGaua-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 28382 0.67 0.969456
Target:  5'- -cCGcuUCCGCCugCUgUAUGACauGCCCu -3'
miRNA:   3'- gaGCuuAGGCGGugGG-AUAUUG--UGGG- -5'
6379 3' -51.5 NC_001847.1 + 28465 0.71 0.859876
Target:  5'- -aCGGG-CCGCCGCCgCUGgAGgGCCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGG-GAUaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 29234 0.69 0.937528
Target:  5'- -aCG-AUCCGCCACUgcAUGGC-CCCg -3'
miRNA:   3'- gaGCuUAGGCGGUGGgaUAUUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 29891 0.73 0.771223
Target:  5'- -gCGGAgugcCUGCCGCCCgaaguGCGCCCg -3'
miRNA:   3'- gaGCUUa---GGCGGUGGGauau-UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 31357 0.66 0.985943
Target:  5'- uUCuacacgCCGCCggcggagcgcGCCCUG-AGCACCCa -3'
miRNA:   3'- gAGcuua--GGCGG----------UGGGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 31907 0.68 0.959272
Target:  5'- -cCGccgCCGCCGCCCgcc--CGCCCc -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 32282 0.69 0.942373
Target:  5'- -cCGAAauuUCCGCCcCCCcccaaaAACACCCc -3'
miRNA:   3'- gaGCUU---AGGCGGuGGGaua---UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 32438 0.72 0.817785
Target:  5'- -gCGGGccuUUCGCCGCCCgcccGGCGCCCu -3'
miRNA:   3'- gaGCUU---AGGCGGUGGGaua-UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 33019 0.7 0.903136
Target:  5'- -gCGGAgugCCGCCGCCCUcuc-CGCCg -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGAuauuGUGGg -5'
6379 3' -51.5 NC_001847.1 + 33664 0.67 0.977679
Target:  5'- cCUCGGucgcuagCgCGCCGCCCUu--GCGgCCg -3'
miRNA:   3'- -GAGCUua-----G-GCGGUGGGAuauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 34921 0.74 0.741626
Target:  5'- aUCGAuGUCCGCCGCCgCUGgcGCAgCUg -3'
miRNA:   3'- gAGCU-UAGGCGGUGG-GAUauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 38108 0.66 0.987584
Target:  5'- -cCGGAcgCCGCUGCCCggcggguGCGCCg -3'
miRNA:   3'- gaGCUUa-GGCGGUGGGauau---UGUGGg -5'
6379 3' -51.5 NC_001847.1 + 38196 0.71 0.882569
Target:  5'- -aCGAAgagcgCCuGCCGCCCgcgGAgGCCCg -3'
miRNA:   3'- gaGCUUa----GG-CGGUGGGauaUUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 38285 0.71 0.889667
Target:  5'- -gCGGA-CCGCCGCCCaccgcCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 38819 0.66 0.984141
Target:  5'- ------cCCGCCGCCCaccGACACCg -3'
miRNA:   3'- gagcuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 40902 0.67 0.980017
Target:  5'- -gCGAG-CCGCUccacgGCCCgcgcgGGCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGG-----UGGGaua--UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 40937 0.68 0.959272
Target:  5'- -gCGAGcUCCGCCGCgcgcagcgCCUcgAACuGCCCg -3'
miRNA:   3'- gaGCUU-AGGCGGUG--------GGAuaUUG-UGGG- -5'
6379 3' -51.5 NC_001847.1 + 42662 0.69 0.942373
Target:  5'- gUCGAAgaggCCGCCGCCgCgcUGGCcaucgaccgGCCCu -3'
miRNA:   3'- gAGCUUa---GGCGGUGG-GauAUUG---------UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.