miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 12276 0.66 0.989073
Target:  5'- -gCGAGUCCaaGCgCGCCCaccAGCACCa -3'
miRNA:   3'- gaGCUUAGG--CG-GUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 14193 0.71 0.870721
Target:  5'- -cUGggUCCGCCcacaucagccaccacGCCCgc--GCGCCCg -3'
miRNA:   3'- gaGCuuAGGCGG---------------UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 16163 0.66 0.984141
Target:  5'- gUCGcAcgCCGCCGCgCUcgucgcGUAGCGCaCCu -3'
miRNA:   3'- gAGC-UuaGGCGGUGgGA------UAUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 16320 0.66 0.984141
Target:  5'- cCUCGGcUCCG-CGCCCUA-GACgACCg -3'
miRNA:   3'- -GAGCUuAGGCgGUGGGAUaUUG-UGGg -5'
6379 3' -51.5 NC_001847.1 + 16699 0.69 0.937528
Target:  5'- -aCGAggCCGCCACCagcaggAGC-CCCa -3'
miRNA:   3'- gaGCUuaGGCGGUGGgaua--UUGuGGG- -5'
6379 3' -51.5 NC_001847.1 + 17818 0.67 0.969456
Target:  5'- -gCGAggCCGCCccccGCCgCUAgguCGCCCa -3'
miRNA:   3'- gaGCUuaGGCGG----UGG-GAUauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 19007 0.76 0.637873
Target:  5'- cCUCGGG-CCGCgCGCCCc--AGCGCCCg -3'
miRNA:   3'- -GAGCUUaGGCG-GUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20039 0.66 0.981543
Target:  5'- -gCGg--CCGCCGCCCUGggcgcgggcaaaaauGCGCUCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGAUau-------------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20105 0.7 0.903136
Target:  5'- aUCGcuagCCcgugGCCGCCCUAcGAUACCCc -3'
miRNA:   3'- gAGCuua-GG----CGGUGGGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20115 0.73 0.799634
Target:  5'- -cCGGAcUCGCCGCCCUcAUGGCGCgCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGA-UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 23488 0.73 0.808795
Target:  5'- gCUCGGcgCgCGUCGCUacagGUGGCACCCa -3'
miRNA:   3'- -GAGCUuaG-GCGGUGGga--UAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 23525 0.71 0.867668
Target:  5'- -aCGAggUCGCCGCCCgugAaGACGCCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGGa--UaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 24300 0.66 0.982169
Target:  5'- uCUCGAuuAUCCGCCAUUggAUuuuuUGCCCg -3'
miRNA:   3'- -GAGCU--UAGGCGGUGGgaUAuu--GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 24448 0.68 0.966289
Target:  5'- -gCGAG-CgCGCCGCCCU----CACCCu -3'
miRNA:   3'- gaGCUUaG-GCGGUGGGAuauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 25011 0.66 0.99042
Target:  5'- aUCGAGUCCagcagcuucagcGCC-CCC-AUGAUGCCa -3'
miRNA:   3'- gAGCUUAGG------------CGGuGGGaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 25283 0.68 0.959272
Target:  5'- gUUGAAcaCCGCgCACCacGUGGCGCCCu -3'
miRNA:   3'- gAGCUUa-GGCG-GUGGgaUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 25399 0.67 0.969456
Target:  5'- aCUCGAucgCC-CCGCCCUcgAGCuugGCCa -3'
miRNA:   3'- -GAGCUua-GGcGGUGGGAuaUUG---UGGg -5'
6379 3' -51.5 NC_001847.1 + 26367 0.66 0.988787
Target:  5'- -cCGggUggGCCGCCCggcagcguccGGCGCCCa -3'
miRNA:   3'- gaGCuuAggCGGUGGGaua-------UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 26406 0.68 0.951312
Target:  5'- -cCGucGUCCGCCGCCCauc--CGCCUa -3'
miRNA:   3'- gaGCu-UAGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 27292 0.71 0.882569
Target:  5'- gUCGGAgCCGCCGCCggu---CGCCCg -3'
miRNA:   3'- gAGCUUaGGCGGUGGgauauuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.