Results 21 - 40 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 3' | -51.5 | NC_001847.1 | + | 12276 | 0.66 | 0.989073 |
Target: 5'- -gCGAGUCCaaGCgCGCCCaccAGCACCa -3' miRNA: 3'- gaGCUUAGG--CG-GUGGGauaUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 14193 | 0.71 | 0.870721 |
Target: 5'- -cUGggUCCGCCcacaucagccaccacGCCCgc--GCGCCCg -3' miRNA: 3'- gaGCuuAGGCGG---------------UGGGauauUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 16163 | 0.66 | 0.984141 |
Target: 5'- gUCGcAcgCCGCCGCgCUcgucgcGUAGCGCaCCu -3' miRNA: 3'- gAGC-UuaGGCGGUGgGA------UAUUGUG-GG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 16320 | 0.66 | 0.984141 |
Target: 5'- cCUCGGcUCCG-CGCCCUA-GACgACCg -3' miRNA: 3'- -GAGCUuAGGCgGUGGGAUaUUG-UGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 16699 | 0.69 | 0.937528 |
Target: 5'- -aCGAggCCGCCACCagcaggAGC-CCCa -3' miRNA: 3'- gaGCUuaGGCGGUGGgaua--UUGuGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 17818 | 0.67 | 0.969456 |
Target: 5'- -gCGAggCCGCCccccGCCgCUAgguCGCCCa -3' miRNA: 3'- gaGCUuaGGCGG----UGG-GAUauuGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 19007 | 0.76 | 0.637873 |
Target: 5'- cCUCGGG-CCGCgCGCCCc--AGCGCCCg -3' miRNA: 3'- -GAGCUUaGGCG-GUGGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 20039 | 0.66 | 0.981543 |
Target: 5'- -gCGg--CCGCCGCCCUGggcgcgggcaaaaauGCGCUCg -3' miRNA: 3'- gaGCuuaGGCGGUGGGAUau-------------UGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 20105 | 0.7 | 0.903136 |
Target: 5'- aUCGcuagCCcgugGCCGCCCUAcGAUACCCc -3' miRNA: 3'- gAGCuua-GG----CGGUGGGAUaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 20115 | 0.73 | 0.799634 |
Target: 5'- -cCGGAcUCGCCGCCCUcAUGGCGCgCg -3' miRNA: 3'- gaGCUUaGGCGGUGGGA-UAUUGUGgG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 23488 | 0.73 | 0.808795 |
Target: 5'- gCUCGGcgCgCGUCGCUacagGUGGCACCCa -3' miRNA: 3'- -GAGCUuaG-GCGGUGGga--UAUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 23525 | 0.71 | 0.867668 |
Target: 5'- -aCGAggUCGCCGCCCgugAaGACGCCg -3' miRNA: 3'- gaGCUuaGGCGGUGGGa--UaUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 24300 | 0.66 | 0.982169 |
Target: 5'- uCUCGAuuAUCCGCCAUUggAUuuuuUGCCCg -3' miRNA: 3'- -GAGCU--UAGGCGGUGGgaUAuu--GUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 24448 | 0.68 | 0.966289 |
Target: 5'- -gCGAG-CgCGCCGCCCU----CACCCu -3' miRNA: 3'- gaGCUUaG-GCGGUGGGAuauuGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 25011 | 0.66 | 0.99042 |
Target: 5'- aUCGAGUCCagcagcuucagcGCC-CCC-AUGAUGCCa -3' miRNA: 3'- gAGCUUAGG------------CGGuGGGaUAUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 25283 | 0.68 | 0.959272 |
Target: 5'- gUUGAAcaCCGCgCACCacGUGGCGCCCu -3' miRNA: 3'- gAGCUUa-GGCG-GUGGgaUAUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 25399 | 0.67 | 0.969456 |
Target: 5'- aCUCGAucgCC-CCGCCCUcgAGCuugGCCa -3' miRNA: 3'- -GAGCUua-GGcGGUGGGAuaUUG---UGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 26367 | 0.66 | 0.988787 |
Target: 5'- -cCGggUggGCCGCCCggcagcguccGGCGCCCa -3' miRNA: 3'- gaGCuuAggCGGUGGGaua-------UUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 26406 | 0.68 | 0.951312 |
Target: 5'- -cCGucGUCCGCCGCCCauc--CGCCUa -3' miRNA: 3'- gaGCu-UAGGCGGUGGGauauuGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 27292 | 0.71 | 0.882569 |
Target: 5'- gUCGGAgCCGCCGCCggu---CGCCCg -3' miRNA: 3'- gAGCUUaGGCGGUGGgauauuGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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