miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 42793 0.68 0.962896
Target:  5'- cCUCGcgg-CGCCGCCCUGUgccGugGCCa -3'
miRNA:   3'- -GAGCuuagGCGGUGGGAUA---UugUGGg -5'
6379 3' -51.5 NC_001847.1 + 43217 0.66 0.987584
Target:  5'- gCUCGGcgCCGUUGCCCgGUGGCGgUg -3'
miRNA:   3'- -GAGCUuaGGCGGUGGGaUAUUGUgGg -5'
6379 3' -51.5 NC_001847.1 + 44650 0.66 0.984141
Target:  5'- aUCGGAggCUGCUGCCCcgccuGCACCg -3'
miRNA:   3'- gAGCUUa-GGCGGUGGGauau-UGUGGg -5'
6379 3' -51.5 NC_001847.1 + 45251 0.69 0.937528
Target:  5'- cCUCGGGcgCCGCguCCCcgAaGGCGCCCc -3'
miRNA:   3'- -GAGCUUa-GGCGguGGGa-UaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 46779 0.69 0.946967
Target:  5'- -cCG-GUCCGCCgcGCCCgc--GCGCCCc -3'
miRNA:   3'- gaGCuUAGGCGG--UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 47003 0.71 0.882569
Target:  5'- -gCGAAUCUGCUGCCCgucaaaaAUGGCGCgCg -3'
miRNA:   3'- gaGCUUAGGCGGUGGGa------UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 47458 0.68 0.955413
Target:  5'- -gCGGcgCCGCagcaGCCCc--AGCGCCCg -3'
miRNA:   3'- gaGCUuaGGCGg---UGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 48596 0.66 0.989073
Target:  5'- cCUCGGcGUCCcccuuaagccgcGCCGCCagcacgcgGGCGCCCa -3'
miRNA:   3'- -GAGCU-UAGG------------CGGUGGgaua----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 48646 0.67 0.980017
Target:  5'- -gCGGGgcgCCGCCGCCCcc--GCAgCCu -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGauauUGUgGG- -5'
6379 3' -51.5 NC_001847.1 + 49088 0.71 0.867668
Target:  5'- gCUCGcAUCCGUgGCCCcc-AGCGCCUc -3'
miRNA:   3'- -GAGCuUAGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 49274 0.74 0.751607
Target:  5'- gCUCaGGUCCG-CGCCgUAUAACAUCCg -3'
miRNA:   3'- -GAGcUUAGGCgGUGGgAUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 49613 0.7 0.9095
Target:  5'- gCUCGGcgCgCGCCACCCg---GCGCUg -3'
miRNA:   3'- -GAGCUuaG-GCGGUGGGauauUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 49846 0.69 0.942373
Target:  5'- gCUUGcguAUCCGCgGCCCUucuacAACGCCg -3'
miRNA:   3'- -GAGCu--UAGGCGgUGGGAua---UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 51042 0.67 0.969456
Target:  5'- -aCGAcgCCGCCuguCCC-AUGACuccuugacggccGCCCg -3'
miRNA:   3'- gaGCUuaGGCGGu--GGGaUAUUG------------UGGG- -5'
6379 3' -51.5 NC_001847.1 + 51673 0.66 0.989073
Target:  5'- -aCGGGaagCCGCCcgggaGCCC---GACGCCCa -3'
miRNA:   3'- gaGCUUa--GGCGG-----UGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 52692 0.72 0.835218
Target:  5'- -cCGGGcCCGCCGCgCCUGgagccaAGCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUG-GGAUa-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 53175 0.69 0.927079
Target:  5'- gCUCGGGcgCUGCgACCCggcUGUGGCGCgCCg -3'
miRNA:   3'- -GAGCUUa-GGCGgUGGG---AUAUUGUG-GG- -5'
6379 3' -51.5 NC_001847.1 + 53211 0.72 0.843645
Target:  5'- cCUCGAcgCCGUCAagCUG-AACGCCCu -3'
miRNA:   3'- -GAGCUuaGGCGGUggGAUaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 53637 0.7 0.896524
Target:  5'- aCUCGcGUCCGCgACaaagaCCg--GGCACCCg -3'
miRNA:   3'- -GAGCuUAGGCGgUG-----GGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 54061 0.66 0.984141
Target:  5'- -gCGAggCCGCCGCCa----GCGCCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGgauauUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.