miRNA display CGI


Results 61 - 80 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 95427 0.69 0.932431
Target:  5'- cCUCGucUUCGCgGCCCUGgacgagGGgACCCu -3'
miRNA:   3'- -GAGCuuAGGCGgUGGGAUa-----UUgUGGG- -5'
6379 3' -51.5 NC_001847.1 + 103726 0.69 0.937528
Target:  5'- -cCGg--CCGCCGCCCgccGGCGCCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 97133 0.74 0.741626
Target:  5'- -gUGuAGUCCGCCACCgUGgc-CACCCg -3'
miRNA:   3'- gaGC-UUAGGCGGUGGgAUauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 20115 0.73 0.799634
Target:  5'- -cCGGAcUCGCCGCCCUcAUGGCGCgCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGA-UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 56792 0.72 0.817785
Target:  5'- gCUCGAggggcuGUUCGCCGCCgc--GGCGCCCa -3'
miRNA:   3'- -GAGCU------UAGGCGGUGGgauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 52692 0.72 0.835218
Target:  5'- -cCGGGcCCGCCGCgCCUGgagccaAGCGCCCc -3'
miRNA:   3'- gaGCUUaGGCGGUG-GGAUa-----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 23525 0.71 0.867668
Target:  5'- -aCGAggUCGCCGCCCgugAaGACGCCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGGa--UaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 47003 0.71 0.882569
Target:  5'- -gCGAAUCUGCUGCCCgucaaaaAUGGCGCgCg -3'
miRNA:   3'- gaGCUUAGGCGGUGGGa------UAUUGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 11534 0.71 0.888968
Target:  5'- -cCGAGUuuGCCGCCUUGgcugGGCuugcaaaGCCCg -3'
miRNA:   3'- gaGCUUAggCGGUGGGAUa---UUG-------UGGG- -5'
6379 3' -51.5 NC_001847.1 + 33019 0.7 0.903136
Target:  5'- -gCGGAgugCCGCCGCCCUcuc-CGCCg -3'
miRNA:   3'- gaGCUUa--GGCGGUGGGAuauuGUGGg -5'
6379 3' -51.5 NC_001847.1 + 90197 0.67 0.977679
Target:  5'- -gCGGcgcgCCGUCGCCCagcccgAGCGCCCc -3'
miRNA:   3'- gaGCUua--GGCGGUGGGaua---UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 7827 0.67 0.975144
Target:  5'- cCUCGGcgCCgGUCGCCgUGUcuccGGCACCg -3'
miRNA:   3'- -GAGCUuaGG-CGGUGGgAUA----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 119798 0.69 0.942843
Target:  5'- cCUCGAAgccaucacgcaccccCCGcCCGCCCccgcuACGCCCg -3'
miRNA:   3'- -GAGCUUa--------------GGC-GGUGGGauau-UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 104842 0.68 0.951312
Target:  5'- cCUCgGggUCCGCgAUCUgc-GACAUCCa -3'
miRNA:   3'- -GAG-CuuAGGCGgUGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 42793 0.68 0.962896
Target:  5'- cCUCGcgg-CGCCGCCCUGUgccGugGCCa -3'
miRNA:   3'- -GAGCuuagGCGGUGGGAUA---UugUGGg -5'
6379 3' -51.5 NC_001847.1 + 94648 0.68 0.962896
Target:  5'- aCUCGAGUaCgGCCugCCcGUGacggaagaGCACCUc -3'
miRNA:   3'- -GAGCUUA-GgCGGugGGaUAU--------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 118181 0.68 0.966289
Target:  5'- cCUC-AAUCUGCCGCCCggc--CGCUCu -3'
miRNA:   3'- -GAGcUUAGGCGGUGGGauauuGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 121879 0.68 0.966289
Target:  5'- cCUgGAcgCgGCCugCCUGcgAAcCGCCCg -3'
miRNA:   3'- -GAgCUuaGgCGGugGGAUa-UU-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 4536 0.67 0.969456
Target:  5'- cCUCGcggCgGCCGCCCgcggGUGGCGCg- -3'
miRNA:   3'- -GAGCuuaGgCGGUGGGa---UAUUGUGgg -5'
6379 3' -51.5 NC_001847.1 + 103826 0.67 0.972406
Target:  5'- gCUCcaccaggCCGCCGCCCgc-GGCGCgCCg -3'
miRNA:   3'- -GAGcuua---GGCGGUGGGauaUUGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.