miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 33716 0.67 0.827959
Target:  5'- cGCGuG-GCCGAGCug--GGGGAGCGAc -3'
miRNA:   3'- -CGCuCaCGGCUCGccugCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 69418 0.67 0.827959
Target:  5'- uCGAGcGCCGccccGGCGGGCucuGGGAUGAa -3'
miRNA:   3'- cGCUCaCGGC----UCGCCUGcu-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 69198 0.67 0.827959
Target:  5'- cGCGAGcuccagcGCCuGGGCGuccGCGGGGAACGc -3'
miRNA:   3'- -CGCUCa------CGG-CUCGCc--UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 29098 0.67 0.827959
Target:  5'- gGCGAGcacgGCgCGGGCGGcgcGCGAGcGGcugcGCGAg -3'
miRNA:   3'- -CGCUCa---CG-GCUCGCC---UGCUC-CU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 119651 0.67 0.827959
Target:  5'- aCGGGgcaGCCGGGCGGGa-GGGcAACGGc -3'
miRNA:   3'- cGCUCa--CGGCUCGCCUgcUCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 131911 0.67 0.827959
Target:  5'- gGCGAGcacgGCgCGGGCGGcgcGCGAGcGGcugcGCGAg -3'
miRNA:   3'- -CGCUCa---CG-GCUCGCC---UGCUC-CU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 27844 0.67 0.819542
Target:  5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 94502 0.67 0.819542
Target:  5'- cGCGAG-GCgCG-GCGGACGuGGGG-GAa -3'
miRNA:   3'- -CGCUCaCG-GCuCGCCUGCuCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 130657 0.67 0.819542
Target:  5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 36988 0.67 0.819542
Target:  5'- aGCGGGcccgcGCCGAGCGG-CGGcGGcGCGc -3'
miRNA:   3'- -CGCUCa----CGGCUCGCCuGCU-CCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 33137 0.67 0.810957
Target:  5'- gGCGGGUgGUgGAGUGGGuCGAGG-GCGc -3'
miRNA:   3'- -CGCUCA-CGgCUCGCCU-GCUCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 48184 0.67 0.810957
Target:  5'- gGCGuccugcuGUGCCGcgccGGCGGccagggcCGAGGAGCGc -3'
miRNA:   3'- -CGCu------CACGGC----UCGCCu------GCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 88549 0.67 0.810957
Target:  5'- cGCGAG-GCCGcGCcGGCGGGGcuGACGc -3'
miRNA:   3'- -CGCUCaCGGCuCGcCUGCUCC--UUGCu -5'
6379 5' -56.9 NC_001847.1 + 68796 0.67 0.810957
Target:  5'- gGCGGccGCgCGAGCGGGCcgacggGGGGAACa- -3'
miRNA:   3'- -CGCUcaCG-GCUCGCCUG------CUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 17240 0.67 0.810957
Target:  5'- cGCGcGUGCCGAGCcuccACGGGGuagccguuGCGGa -3'
miRNA:   3'- -CGCuCACGGCUCGcc--UGCUCCu-------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 53704 0.67 0.810957
Target:  5'- cGCGAGcgcGCCGccGGCGGcuCGcGGGGCGGa -3'
miRNA:   3'- -CGCUCa--CGGC--UCGCCu-GCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 117308 0.67 0.81009
Target:  5'- cGCGA--GCCGcgaugggcgaccuAGCGG-CGGGGGGCGGc -3'
miRNA:   3'- -CGCUcaCGGC-------------UCGCCuGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 59034 0.68 0.802214
Target:  5'- gGCGGGUGCgGcGGCGGAgGAGaGugGu -3'
miRNA:   3'- -CGCUCACGgC-UCGCCUgCUCcUugCu -5'
6379 5' -56.9 NC_001847.1 + 129264 0.68 0.802214
Target:  5'- cGCGAG-GCagGGGCGGGaaUGGGGAGgGGa -3'
miRNA:   3'- -CGCUCaCGg-CUCGCCU--GCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 97830 0.68 0.802214
Target:  5'- gGCGcGUGCCGccacacggcuAGCacgucGGACGGGGAaagGCGGc -3'
miRNA:   3'- -CGCuCACGGC----------UCG-----CCUGCUCCU---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.