miRNA display CGI


Results 41 - 60 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 128191 0.66 0.852138
Target:  5'- gGCGGcgGCaGGGCGGAgGGGGAccGCGGa -3'
miRNA:   3'- -CGCUcaCGgCUCGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 25378 0.66 0.852138
Target:  5'- gGCGGcgGCaGGGCGGAgGGGGAccGCGGa -3'
miRNA:   3'- -CGCUcaCGgCUCGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 111664 0.66 0.852138
Target:  5'- aGCGAcgcGcGCCGAGCGcGAuggcCGAGGcGGCGGa -3'
miRNA:   3'- -CGCU---CaCGGCUCGC-CU----GCUCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 82473 0.66 0.852138
Target:  5'- uGCGGcGUGCCGuG-GGACGAGcccGCGGc -3'
miRNA:   3'- -CGCU-CACGGCuCgCCUGCUCcu-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 97310 0.66 0.852138
Target:  5'- gGCGcGUGCCuc-CGucCGAGGAGCGAg -3'
miRNA:   3'- -CGCuCACGGcucGCcuGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 68951 0.66 0.852138
Target:  5'- gGCG-GcGCCGAuGCGGAagaGGGGGCGGc -3'
miRNA:   3'- -CGCuCaCGGCU-CGCCUgc-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 77222 0.66 0.852138
Target:  5'- cGCGGGccGCCGGGCccGGACuuGGcGCGGu -3'
miRNA:   3'- -CGCUCa-CGGCUCG--CCUGcuCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 27308 0.67 0.844265
Target:  5'- nGCG-GUGCCG-GCGGGCGuGuccACGGc -3'
miRNA:   3'- -CGCuCACGGCuCGCCUGCuCcu-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 17499 0.67 0.844265
Target:  5'- uGCGGGgGUCG-GCGGGCGaAGGGAa-- -3'
miRNA:   3'- -CGCUCaCGGCuCGCCUGC-UCCUUgcu -5'
6379 5' -56.9 NC_001847.1 + 32216 0.67 0.844265
Target:  5'- gGCGGG-GCCGGGgcgcggggcgcCGGACccAGGGGCGGa -3'
miRNA:   3'- -CGCUCaCGGCUC-----------GCCUGc-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 135029 0.67 0.844265
Target:  5'- gGCGGG-GCCGGGgcgcggggcgcCGGACccAGGGGCGGa -3'
miRNA:   3'- -CGCUCaCGGCUC-----------GCCUGc-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 86213 0.67 0.844265
Target:  5'- uGCuGGUGCaaguggaGAGCcugcaccgcguGGACGAGGAGCu- -3'
miRNA:   3'- -CGcUCACGg------CUCG-----------CCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 128787 0.67 0.836203
Target:  5'- cGCGGGcgGUCagaccaGGGCGGGCGGGcGGGCGc -3'
miRNA:   3'- -CGCUCa-CGG------CUCGCCUGCUC-CUUGCu -5'
6379 5' -56.9 NC_001847.1 + 99345 0.67 0.836203
Target:  5'- gGUGGGcgGCCGGGCGGAUcuuGGccccuGCGAc -3'
miRNA:   3'- -CGCUCa-CGGCUCGCCUGcu-CCu----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 120924 0.67 0.836203
Target:  5'- aCGAGgGCgGGGCGGGCGcGcGGGCGu -3'
miRNA:   3'- cGCUCaCGgCUCGCCUGCuC-CUUGCu -5'
6379 5' -56.9 NC_001847.1 + 56684 0.67 0.836203
Target:  5'- cGCGAGU-CCGuGCGcACGAGGuGCa- -3'
miRNA:   3'- -CGCUCAcGGCuCGCcUGCUCCuUGcu -5'
6379 5' -56.9 NC_001847.1 + 25974 0.67 0.836203
Target:  5'- cGCGGGcgGUCagaccaGGGCGGGCGGGcGGGCGc -3'
miRNA:   3'- -CGCUCa-CGG------CUCGCCUGCUC-CUUGCu -5'
6379 5' -56.9 NC_001847.1 + 19708 0.67 0.836203
Target:  5'- cCGAGcagaGCCGGGCGcuGACGgcaagccggcuGGGGACGAc -3'
miRNA:   3'- cGCUCa---CGGCUCGC--CUGC-----------UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 63993 0.67 0.835387
Target:  5'- gGCGcucaAGUGCCgcGAGCucuacccGGGCGGcGGGACGGg -3'
miRNA:   3'- -CGC----UCACGG--CUCG-------CCUGCU-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 7248 0.67 0.827959
Target:  5'- uCGGGUGgCUGuGCGGGCGcggcGGGGGCa- -3'
miRNA:   3'- cGCUCAC-GGCuCGCCUGC----UCCUUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.