miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 16113 0.66 0.874565
Target:  5'- uCGAGUGaCGAcGacgaGGACGAGGGcaaggACGAg -3'
miRNA:   3'- cGCUCACgGCU-Cg---CCUGCUCCU-----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 30538 0.66 0.870227
Target:  5'- cGCGAcGUcGCCGAGCucgucgcgcggcuccGcGGCGucuGGGACGAg -3'
miRNA:   3'- -CGCU-CA-CGGCUCG---------------C-CUGCu--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 73205 0.66 0.867294
Target:  5'- cGCGGGccgcgccgccGCUGAcGCGGAgGAGGGggGCGGc -3'
miRNA:   3'- -CGCUCa---------CGGCU-CGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 134892 0.66 0.867294
Target:  5'- aGgGAGgagGagCGAG-GGAgGAGGAGCGAg -3'
miRNA:   3'- -CgCUCa--Cg-GCUCgCCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 46892 0.66 0.867294
Target:  5'- uGCGAGcGCCGcuucAGCGaGGCuucGGGGGGCGc -3'
miRNA:   3'- -CGCUCaCGGC----UCGC-CUG---CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 121342 0.66 0.867294
Target:  5'- cGCGuGUGUcuugguuucugCGcGGCGGGCGgggugGGGAGCGGg -3'
miRNA:   3'- -CGCuCACG-----------GC-UCGCCUGC-----UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 54505 0.66 0.867294
Target:  5'- cCGGG-GCCGggguGGgGGGCGGuGGGGCGGg -3'
miRNA:   3'- cGCUCaCGGC----UCgCCUGCU-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 61443 0.66 0.867294
Target:  5'- cGCGcc-GCCGGGCGcGGCGAGG--CGGu -3'
miRNA:   3'- -CGCucaCGGCUCGC-CUGCUCCuuGCU- -5'
6379 5' -56.9 NC_001847.1 + 61318 0.66 0.867294
Target:  5'- cGCGGGUGCgCgGGGCGgGGCG-GGcGCGc -3'
miRNA:   3'- -CGCUCACG-G-CUCGC-CUGCuCCuUGCu -5'
6379 5' -56.9 NC_001847.1 + 59871 0.66 0.867294
Target:  5'- cCGAGgGCCGGcgcGCGGccuccgcguugGCGAGGAggGCGGc -3'
miRNA:   3'- cGCUCaCGGCU---CGCC-----------UGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 78692 0.66 0.867294
Target:  5'- gGCGcuGGUGCCGGGCaGcacGCGAGugcGGGCGGu -3'
miRNA:   3'- -CGC--UCACGGCUCGcC---UGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 41976 0.66 0.865815
Target:  5'- gGCGgcAGUcugucucGCCGAGCGcugcgucGGCGcGGAACGAa -3'
miRNA:   3'- -CGC--UCA-------CGGCUCGC-------CUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 73744 0.66 0.864328
Target:  5'- cGCGAGggcaguuccaagcGCCGGGCGGcgGCGcGGGccgcuACGAg -3'
miRNA:   3'- -CGCUCa------------CGGCUCGCC--UGCuCCU-----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 62483 0.66 0.859817
Target:  5'- -gGGGUcGCCG-GCGGGCGGccgcGGggUGGc -3'
miRNA:   3'- cgCUCA-CGGCuCGCCUGCU----CCuuGCU- -5'
6379 5' -56.9 NC_001847.1 + 134777 0.66 0.859817
Target:  5'- cGCGGcGcGCgGGGCGGGCcccGGGGcGCGAa -3'
miRNA:   3'- -CGCU-CaCGgCUCGCCUG---CUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 81030 0.66 0.859817
Target:  5'- gGCGAc-GCCGccGCGGACugcGGGGGCGAc -3'
miRNA:   3'- -CGCUcaCGGCu-CGCCUGc--UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 118658 0.66 0.859817
Target:  5'- cCGAGUGCCccacccaGGCaGGGCGGGGGuUGGg -3'
miRNA:   3'- cGCUCACGGc------UCG-CCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 31964 0.66 0.859817
Target:  5'- cGCGGcGcGCgGGGCGGGCcccGGGGcGCGAa -3'
miRNA:   3'- -CGCU-CaCGgCUCGCCUG---CUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 70803 0.66 0.858297
Target:  5'- gGCGGGgccgggaggggauccGCCGAGCGccgaguccccguaaGGCGAucGGGGCGAa -3'
miRNA:   3'- -CGCUCa--------------CGGCUCGC--------------CUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 82473 0.66 0.852138
Target:  5'- uGCGGcGUGCCGuG-GGACGAGcccGCGGc -3'
miRNA:   3'- -CGCU-CACGGCuCgCCUGCUCcu-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.