miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 54375 0.73 0.517921
Target:  5'- cGCGAGcUGCUGcGGCGGGCGGccGcGGGCGAg -3'
miRNA:   3'- -CGCUC-ACGGC-UCGCCUGCU--C-CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 29338 0.72 0.527635
Target:  5'- cGCGAGUGCgCGGGCGGcCGuuGAaaacagcgGCGAc -3'
miRNA:   3'- -CGCUCACG-GCUCGCCuGCucCU--------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 11321 0.72 0.527635
Target:  5'- cCGAG-GCCG-GCGGGCGGcuggcgccGGAGCGGg -3'
miRNA:   3'- cGCUCaCGGCuCGCCUGCU--------CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 54647 0.72 0.557158
Target:  5'- cGCGAGcggcagcGCCGcgcuGCGGaACGGGGAGCGc -3'
miRNA:   3'- -CGCUCa------CGGCu---CGCC-UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 103624 0.72 0.567108
Target:  5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3'
miRNA:   3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 811 0.72 0.567108
Target:  5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3'
miRNA:   3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 74027 0.72 0.567108
Target:  5'- gGCGcGUGCCGcuGGCGGACGuGGcGCu- -3'
miRNA:   3'- -CGCuCACGGC--UCGCCUGCuCCuUGcu -5'
6379 5' -56.9 NC_001847.1 + 48841 0.72 0.567108
Target:  5'- cGCGGGggcgccucgGCCGcGCGGcGCGAGGuACGGg -3'
miRNA:   3'- -CGCUCa--------CGGCuCGCC-UGCUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 27728 0.71 0.596192
Target:  5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3'
miRNA:   3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 130541 0.71 0.596192
Target:  5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3'
miRNA:   3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 26506 0.71 0.5972
Target:  5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3'
miRNA:   3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 129319 0.71 0.5972
Target:  5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3'
miRNA:   3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 92088 0.71 0.60729
Target:  5'- cGCGu-UGCCGAuUGGAUGAGGAAgGAg -3'
miRNA:   3'- -CGCucACGGCUcGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 51074 0.71 0.617398
Target:  5'- gGCGuucGUGCgCGGGCuGGuCGAGGAccGCGAc -3'
miRNA:   3'- -CGCu--CACG-GCUCG-CCuGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 134734 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134776 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134818 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134860 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 2147 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 109260 0.71 0.627517
Target:  5'- aGCGGGUcgGCagGGGCGGGCugcaagcgaGGGGGGCGAg -3'
miRNA:   3'- -CGCUCA--CGg-CUCGCCUG---------CUCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.