miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 107514 1.11 0.00186
Target:  5'- cGCGAGUGCCGAGCGGACGAGGAACGAu -3'
miRNA:   3'- -CGCUCACGGCUCGCCUGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 125464 0.79 0.226208
Target:  5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3'
miRNA:   3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5'
6379 5' -56.9 NC_001847.1 + 22651 0.79 0.226208
Target:  5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3'
miRNA:   3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5'
6379 5' -56.9 NC_001847.1 + 42729 0.79 0.231724
Target:  5'- gGCGGGcgGCCGcGCGGGCGGcGGGGCGGa -3'
miRNA:   3'- -CGCUCa-CGGCuCGCCUGCU-CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 131007 0.76 0.3435
Target:  5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3'
miRNA:   3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 28194 0.76 0.3435
Target:  5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3'
miRNA:   3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 81069 0.75 0.374871
Target:  5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3'
miRNA:   3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 34646 0.75 0.383011
Target:  5'- cCGAG-GCCGAGCGGcGCGccgaGGGGGCGGc -3'
miRNA:   3'- cGCUCaCGGCUCGCC-UGC----UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 88256 0.75 0.408124
Target:  5'- cGCGGGgcGCCGGGCGGGgacggGGGGAGCGc -3'
miRNA:   3'- -CGCUCa-CGGCUCGCCUg----CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 130718 0.74 0.425428
Target:  5'- cCGAG-GCCGAGgGGGCGgAGGcGCGGa -3'
miRNA:   3'- cGCUCaCGGCUCgCCUGC-UCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 32944 0.74 0.452182
Target:  5'- gGCGGG-GCCGGGgGGGCgGAGGAGgcCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCgCCUG-CUCCUU--GCU- -5'
6379 5' -56.9 NC_001847.1 + 32991 0.73 0.47983
Target:  5'- gGCGGGcagggcgGCCgGAGCGGcCGGGGGGCGc -3'
miRNA:   3'- -CGCUCa------CGG-CUCGCCuGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 42173 0.73 0.488286
Target:  5'- gGCGGGUGCUG-GCGGaauGCGAGGccuucgcAGCGGa -3'
miRNA:   3'- -CGCUCACGGCuCGCC---UGCUCC-------UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 27905 0.73 0.489229
Target:  5'- cCGAG-GCCGAGgGGGCgGAGGGcGCGGa -3'
miRNA:   3'- cGCUCaCGGCUCgCCUG-CUCCU-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 34507 0.73 0.489229
Target:  5'- aGCGAG-GCCGAcGCGGACGGcGccGGCGAu -3'
miRNA:   3'- -CGCUCaCGGCU-CGCCUGCUcC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 22780 0.73 0.498713
Target:  5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3'
miRNA:   3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 125593 0.73 0.498713
Target:  5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3'
miRNA:   3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 73157 0.73 0.498713
Target:  5'- gGCGGcGcGCCGGGCGGAgGAGGcgGACGc -3'
miRNA:   3'- -CGCU-CaCGGCUCGCCUgCUCC--UUGCu -5'
6379 5' -56.9 NC_001847.1 + 100528 0.73 0.498713
Target:  5'- uGCGGGUcGCggagUGGGUGGGCGGGGAGCc- -3'
miRNA:   3'- -CGCUCA-CG----GCUCGCCUGCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 101082 0.73 0.517921
Target:  5'- cGCGGGgGCCGGGUcGGCGGGGcgGGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGcCUGCUCC--UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.