miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 125464 0.79 0.226208
Target:  5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3'
miRNA:   3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5'
6379 5' -56.9 NC_001847.1 + 51074 0.71 0.617398
Target:  5'- gGCGuucGUGCgCGGGCuGGuCGAGGAccGCGAc -3'
miRNA:   3'- -CGCu--CACG-GCUCG-CCuGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 104960 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 26872 0.66 0.888465
Target:  5'- cCGAGUGCCuGAuGCGGgaacGCGcGGcAGCGGa -3'
miRNA:   3'- cGCUCACGG-CU-CGCC----UGCuCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130718 0.74 0.425428
Target:  5'- cCGAG-GCCGAGgGGGCGgAGGcGCGGa -3'
miRNA:   3'- cGCUCaCGGCUCgCCUGC-UCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 34507 0.73 0.489229
Target:  5'- aGCGAG-GCCGAcGCGGACGGcGccGGCGAu -3'
miRNA:   3'- -CGCUCaCGGCU-CGCCUGCUcC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 125593 0.73 0.498713
Target:  5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3'
miRNA:   3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 101082 0.73 0.517921
Target:  5'- cGCGGGgGCCGGGUcGGCGGGGcgGGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGcCUGCUCC--UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 29338 0.72 0.527635
Target:  5'- cGCGAGUGCgCGGGCGGcCGuuGAaaacagcgGCGAc -3'
miRNA:   3'- -CGCUCACG-GCUCGCCuGCucCU--------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 129319 0.71 0.5972
Target:  5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3'
miRNA:   3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 74027 0.72 0.567108
Target:  5'- gGCGcGUGCCGcuGGCGGACGuGGcGCu- -3'
miRNA:   3'- -CGCuCACGGC--UCGCCUGCuCCuUGcu -5'
6379 5' -56.9 NC_001847.1 + 11321 0.72 0.527635
Target:  5'- cCGAG-GCCG-GCGGGCGGcuggcgccGGAGCGGg -3'
miRNA:   3'- cGCUCaCGGCuCGCCUGCU--------CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 131007 0.76 0.3435
Target:  5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3'
miRNA:   3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 103624 0.72 0.567108
Target:  5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3'
miRNA:   3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 81069 0.75 0.374871
Target:  5'- gGCGGG-GCCuGGCuGGACGGGGAcgACGAa -3'
miRNA:   3'- -CGCUCaCGGcUCG-CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 54375 0.73 0.517921
Target:  5'- cGCGAGcUGCUGcGGCGGGCGGccGcGGGCGAg -3'
miRNA:   3'- -CGCUC-ACGGC-UCGCCUGCU--C-CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130541 0.71 0.596192
Target:  5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3'
miRNA:   3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 26450 0.71 0.627517
Target:  5'- aGCGGuagGCCGcGCGGcuguucgccagcGCGGGGAGCGGa -3'
miRNA:   3'- -CGCUca-CGGCuCGCC------------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 34646 0.75 0.383011
Target:  5'- cCGAG-GCCGAGCGGcGCGccgaGGGGGCGGc -3'
miRNA:   3'- cGCUCaCGGCUCGCC-UGC----UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 100528 0.73 0.498713
Target:  5'- uGCGGGUcGCggagUGGGUGGGCGGGGAGCc- -3'
miRNA:   3'- -CGCUCA-CG----GCUCGCCUGCUCCUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.