miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 52 0.7 0.678006
Target:  5'- gGCGcGUGCauugcGGCGGGCG-GGGGCGGg -3'
miRNA:   3'- -CGCuCACGgc---UCGCCUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 415 0.7 0.667949
Target:  5'- cCGAGgGCCcgGGGCGGGCGGGcGGCGGc -3'
miRNA:   3'- cGCUCaCGG--CUCGCCUGCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 811 0.72 0.567108
Target:  5'- gGCGGGggaCGAcgccGCGGACGAGGA-CGAg -3'
miRNA:   3'- -CGCUCacgGCU----CGCCUGCUCCUuGCU- -5'
6379 5' -56.9 NC_001847.1 + 2147 0.71 0.627517
Target:  5'- gGCGAGcGCCGGGCGccagggcuCGGGGAagaGCGGg -3'
miRNA:   3'- -CGCUCaCGGCUCGCcu------GCUCCU---UGCU- -5'
6379 5' -56.9 NC_001847.1 + 2297 0.68 0.75641
Target:  5'- gGCGGGgccGCCGGGCGGcAUGGGccccagcacgcGGGCGGg -3'
miRNA:   3'- -CGCUCa--CGGCUCGCC-UGCUC-----------CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 7248 0.67 0.827959
Target:  5'- uCGGGUGgCUGuGCGGGCGcggcGGGGGCa- -3'
miRNA:   3'- cGCUCAC-GGCuCGCCUGC----UCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 8982 0.68 0.784285
Target:  5'- cCGGG-GgCGGGCaGACGGGGGugGGg -3'
miRNA:   3'- cGCUCaCgGCUCGcCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 10314 0.68 0.75641
Target:  5'- aCGAGgagGaCGAggagGCGGACGAGGAGgGGg -3'
miRNA:   3'- cGCUCa--CgGCU----CGCCUGCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 10642 0.68 0.802214
Target:  5'- aGCG-GUGCCu-GgGGACGcGGAGCGc -3'
miRNA:   3'- -CGCuCACGGcuCgCCUGCuCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 11321 0.72 0.527635
Target:  5'- cCGAG-GCCG-GCGGGCGGcuggcgccGGAGCGGg -3'
miRNA:   3'- cGCUCaCGGCuCGCCUGCU--------CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 12935 0.69 0.746892
Target:  5'- cGCGcGUGUCGucguGCGGugGGGcGGCGGg -3'
miRNA:   3'- -CGCuCACGGCu---CGCCugCUCcUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 14333 0.7 0.667949
Target:  5'- gGUGGG-GCCGGGCGuGguggcggcgccuGCGGGGAACGc -3'
miRNA:   3'- -CGCUCaCGGCUCGC-C------------UGCUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 14568 0.71 0.636627
Target:  5'- cGCGGGUGCUG-GCGGGCGcgcggcucucuaAGGAcgccgucuggcgcGCGGu -3'
miRNA:   3'- -CGCUCACGGCuCGCCUGC------------UCCU-------------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 15028 0.66 0.874565
Target:  5'- cGCGAGccgcgGCCGc-CGGGCGAGcuguGCGAg -3'
miRNA:   3'- -CGCUCa----CGGCucGCCUGCUCcu--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 15324 0.71 0.637639
Target:  5'- cGCGGGcGUagcggGGGCGGGCGGGGggUGc -3'
miRNA:   3'- -CGCUCaCGg----CUCGCCUGCUCCuuGCu -5'
6379 5' -56.9 NC_001847.1 + 15539 0.66 0.888465
Target:  5'- cGCGGGccucgucgucGCCGGGUGGcGCGGGGGAa-- -3'
miRNA:   3'- -CGCUCa---------CGGCUCGCC-UGCUCCUUgcu -5'
6379 5' -56.9 NC_001847.1 + 16113 0.66 0.874565
Target:  5'- uCGAGUGaCGAcGacgaGGACGAGGGcaaggACGAg -3'
miRNA:   3'- cGCUCACgGCU-Cg---CCUGCUCCU-----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 16963 0.7 0.647757
Target:  5'- -aGAGgGCCGGGCGGcagauUGAGGGGCa- -3'
miRNA:   3'- cgCUCaCGGCUCGCCu----GCUCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 17240 0.67 0.810957
Target:  5'- cGCGcGUGCCGAGCcuccACGGGGuagccguuGCGGa -3'
miRNA:   3'- -CGCuCACGGCUCGcc--UGCUCCu-------UGCU- -5'
6379 5' -56.9 NC_001847.1 + 17499 0.67 0.844265
Target:  5'- uGCGGGgGUCG-GCGGGCGaAGGGAa-- -3'
miRNA:   3'- -CGCUCaCGGCuCGCCUGC-UCCUUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.