miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 135029 0.67 0.844265
Target:  5'- gGCGGG-GCCGGGgcgcggggcgcCGGACccAGGGGCGGa -3'
miRNA:   3'- -CGCUCaCGGCUC-----------GCCUGc-UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134920 0.69 0.746892
Target:  5'- cGCGAGgcccggGCuCGGGCccccGGGCGccGGGGGCGGg -3'
miRNA:   3'- -CGCUCa-----CG-GCUCG----CCUGC--UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134892 0.66 0.867294
Target:  5'- aGgGAGgagGagCGAG-GGAgGAGGAGCGAg -3'
miRNA:   3'- -CgCUCa--Cg-GCUCgCCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134860 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134821 0.66 0.881623
Target:  5'- cGCGGGcGUgGAGCGcgaagcuccGGCGGGGcGCGGg -3'
miRNA:   3'- -CGCUCaCGgCUCGC---------CUGCUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134818 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134777 0.66 0.859817
Target:  5'- cGCGGcGcGCgGGGCGGGCcccGGGGcGCGAa -3'
miRNA:   3'- -CGCU-CaCGgCUCGCCUG---CUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134776 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134734 0.71 0.627517
Target:  5'- aGCGAGggagGagGAGCgagGGAgGAGGAGCGAg -3'
miRNA:   3'- -CGCUCa---CggCUCG---CCUgCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 133714 0.7 0.667949
Target:  5'- aGCGcaaauAGUGCCuGGCGGGCGcGGGGCc- -3'
miRNA:   3'- -CGC-----UCACGGcUCGCCUGCuCCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 133589 0.69 0.727569
Target:  5'- cGCGGGcGCgcuauCGGGCGGGCGGGcuuGGGCGGc -3'
miRNA:   3'- -CGCUCaCG-----GCUCGCCUGCUC---CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 132480 0.69 0.727569
Target:  5'- aCGGGU-CCGAGgcggaGGACGGGGAggACGGg -3'
miRNA:   3'- cGCUCAcGGCUCg----CCUGCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 131911 0.67 0.827959
Target:  5'- gGCGAGcacgGCgCGGGCGGcgcGCGAGcGGcugcGCGAg -3'
miRNA:   3'- -CGCUCa---CG-GCUCGCC---UGCUC-CU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 131418 0.68 0.793321
Target:  5'- cGCGAGgcgGCCGcgcgcuacgcGGCGGccGCGGGGcccGCGGc -3'
miRNA:   3'- -CGCUCa--CGGC----------UCGCC--UGCUCCu--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 131007 0.76 0.3435
Target:  5'- aGCGA-UGCCGGGCccgaGGACGAugGGGGCGAg -3'
miRNA:   3'- -CGCUcACGGCUCG----CCUGCU--CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130874 0.66 0.880927
Target:  5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3'
miRNA:   3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130718 0.74 0.425428
Target:  5'- cCGAG-GCCGAGgGGGCGgAGGcGCGGa -3'
miRNA:   3'- cGCUCaCGGCUCgCCUGC-UCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130657 0.67 0.819542
Target:  5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 130541 0.71 0.596192
Target:  5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3'
miRNA:   3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 129319 0.71 0.5972
Target:  5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3'
miRNA:   3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.