Results 1 - 20 of 194 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 83038 | 0.66 | 0.888465 |
Target: 5'- cGCGGGccgcguggccaUGaCCGAGCGcACGAGGuugcuggcGGCGAa -3' miRNA: 3'- -CGCUC-----------AC-GGCUCGCcUGCUCC--------UUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 73744 | 0.66 | 0.864328 |
Target: 5'- cGCGAGggcaguuccaagcGCCGGGCGGcgGCGcGGGccgcuACGAg -3' miRNA: 3'- -CGCUCa------------CGGCUCGCC--UGCuCCU-----UGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 31964 | 0.66 | 0.859817 |
Target: 5'- cGCGGcGcGCgGGGCGGGCcccGGGGcGCGAa -3' miRNA: 3'- -CGCU-CaCGgCUCGCCUG---CUCCuUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 70803 | 0.66 | 0.858297 |
Target: 5'- gGCGGGgccgggaggggauccGCCGAGCGccgaguccccguaaGGCGAucGGGGCGAa -3' miRNA: 3'- -CGCUCa--------------CGGCUCGC--------------CUGCU--CCUUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 25378 | 0.66 | 0.852138 |
Target: 5'- gGCGGcgGCaGGGCGGAgGGGGAccGCGGa -3' miRNA: 3'- -CGCUcaCGgCUCGCCUgCUCCU--UGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 111664 | 0.66 | 0.852138 |
Target: 5'- aGCGAcgcGcGCCGAGCGcGAuggcCGAGGcGGCGGa -3' miRNA: 3'- -CGCU---CaCGGCUCGC-CU----GCUCC-UUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 68951 | 0.66 | 0.852138 |
Target: 5'- gGCG-GcGCCGAuGCGGAagaGGGGGCGGc -3' miRNA: 3'- -CGCuCaCGGCU-CGCCUgc-UCCUUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 77222 | 0.66 | 0.852138 |
Target: 5'- cGCGGGccGCCGGGCccGGACuuGGcGCGGu -3' miRNA: 3'- -CGCUCa-CGGCUCG--CCUGcuCCuUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 82473 | 0.66 | 0.852138 |
Target: 5'- uGCGGcGUGCCGuG-GGACGAGcccGCGGc -3' miRNA: 3'- -CGCU-CACGGCuCgCCUGCUCcu-UGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 61318 | 0.66 | 0.867294 |
Target: 5'- cGCGGGUGCgCgGGGCGgGGCG-GGcGCGc -3' miRNA: 3'- -CGCUCACG-G-CUCGC-CUGCuCCuUGCu -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 61443 | 0.66 | 0.867294 |
Target: 5'- cGCGcc-GCCGGGCGcGGCGAGG--CGGu -3' miRNA: 3'- -CGCucaCGGCUCGC-CUGCUCCuuGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 73205 | 0.66 | 0.867294 |
Target: 5'- cGCGGGccgcgccgccGCUGAcGCGGAgGAGGGggGCGGc -3' miRNA: 3'- -CGCUCa---------CGGCU-CGCCUgCUCCU--UGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 15539 | 0.66 | 0.888465 |
Target: 5'- cGCGGGccucgucgucGCCGGGUGGcGCGGGGGAa-- -3' miRNA: 3'- -CGCUCa---------CGGCUCGCC-UGCUCCUUgcu -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 32790 | 0.66 | 0.881623 |
Target: 5'- gGgGAGgGCCGggGGCGGACGGcgcguuGGAGCc- -3' miRNA: 3'- -CgCUCaCGGC--UCGCCUGCU------CCUUGcu -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 32008 | 0.66 | 0.881623 |
Target: 5'- cGCGGGcGUgGAGCGcgaagcuccGGCGGGGcGCGGg -3' miRNA: 3'- -CGCUCaCGgCUCGC---------CUGCUCCuUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 108293 | 0.66 | 0.880927 |
Target: 5'- uCGGGUGCCuGGGCGGAcugcucuCGuGGAccACGc -3' miRNA: 3'- cGCUCACGG-CUCGCCU-------GCuCCU--UGCu -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 28061 | 0.66 | 0.880927 |
Target: 5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3' miRNA: 3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 96940 | 0.66 | 0.874565 |
Target: 5'- aGCGGGUcGCCGcuAGCGG-CGGcaaaguccGGGACGu -3' miRNA: 3'- -CGCUCA-CGGC--UCGCCuGCU--------CCUUGCu -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 46892 | 0.66 | 0.867294 |
Target: 5'- uGCGAGcGCCGcuucAGCGaGGCuucGGGGGGCGc -3' miRNA: 3'- -CGCUCaCGGC----UCGC-CUG---CUCCUUGCu -5' |
|||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 134892 | 0.66 | 0.867294 |
Target: 5'- aGgGAGgagGagCGAG-GGAgGAGGAGCGAg -3' miRNA: 3'- -CgCUCa--Cg-GCUCgCCUgCUCCUUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home