miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 18114 0.7 0.647757
Target:  5'- gGCGAGcccccGCCGGGCaGAC-AGGAGCGc -3'
miRNA:   3'- -CGCUCa----CGGCUCGcCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 19708 0.67 0.836203
Target:  5'- cCGAGcagaGCCGGGCGcuGACGgcaagccggcuGGGGACGAc -3'
miRNA:   3'- cGCUCa---CGGCUCGC--CUGC-----------UCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 21908 0.68 0.784285
Target:  5'- -gGAGacgGCCGAggccGCGGGCGAGGcgGAgGAg -3'
miRNA:   3'- cgCUCa--CGGCU----CGCCUGCUCC--UUgCU- -5'
6379 5' -56.9 NC_001847.1 + 22651 0.79 0.226208
Target:  5'- gGCGGGcuUGCCccGGGCGGGCGAGGGAuCGGg -3'
miRNA:   3'- -CGCUC--ACGG--CUCGCCUGCUCCUU-GCU- -5'
6379 5' -56.9 NC_001847.1 + 22714 0.69 0.717782
Target:  5'- gGCGAGggaUCGGGgGGAUG-GGGGCGAg -3'
miRNA:   3'- -CGCUCac-GGCUCgCCUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 22780 0.73 0.498713
Target:  5'- gGCGAGgGaUCGGGgGGAUGGGGAugGGg -3'
miRNA:   3'- -CGCUCaC-GGCUCgCCUGCUCCUugCU- -5'
6379 5' -56.9 NC_001847.1 + 24262 0.69 0.746892
Target:  5'- gGCGAGagcauguccaUGCCGAGCuccaaGAGGAGCGu -3'
miRNA:   3'- -CGCUC----------ACGGCUCGccug-CUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 25378 0.66 0.852138
Target:  5'- gGCGGcgGCaGGGCGGAgGGGGAccGCGGa -3'
miRNA:   3'- -CGCUcaCGgCUCGCCUgCUCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 25901 0.68 0.793321
Target:  5'- aGCgGGGUGCgGGGUGcGAgGGGGAGgGGg -3'
miRNA:   3'- -CG-CUCACGgCUCGC-CUgCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 25974 0.67 0.836203
Target:  5'- cGCGGGcgGUCagaccaGGGCGGGCGGGcGGGCGc -3'
miRNA:   3'- -CGCUCa-CGG------CUCGCCUGCUC-CUUGCu -5'
6379 5' -56.9 NC_001847.1 + 26450 0.71 0.627517
Target:  5'- aGCGGuagGCCGcGCGGcuguucgccagcGCGGGGAGCGGa -3'
miRNA:   3'- -CGCUca-CGGCuCGCC------------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 26451 0.68 0.802214
Target:  5'- cGCGAG-GCagGGGCGGGaaUGGGGAGgGGa -3'
miRNA:   3'- -CGCUCaCGg-CUCGCCU--GCUCCUUgCU- -5'
6379 5' -56.9 NC_001847.1 + 26506 0.71 0.5972
Target:  5'- gGCGGGccUGCCGGGCgcgGGGCcGGGGGCGu -3'
miRNA:   3'- -CGCUC--ACGGCUCG---CCUGcUCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 26872 0.66 0.888465
Target:  5'- cCGAGUGCCuGAuGCGGgaacGCGcGGcAGCGGa -3'
miRNA:   3'- cGCUCACGG-CU-CGCC----UGCuCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 27267 0.7 0.654833
Target:  5'- cGCGAGaGCCGGaugugaggcugcccGcCGGGCGAGaGGACGGc -3'
miRNA:   3'- -CGCUCaCGGCU--------------C-GCCUGCUC-CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 27308 0.67 0.844265
Target:  5'- nGCG-GUGCCG-GCGGGCGuGuccACGGc -3'
miRNA:   3'- -CGCuCACGGCuCGCCUGCuCcu-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 27728 0.71 0.596192
Target:  5'- cCGAGcugGCCGAGCuguggcggaugguGGGCGGGGAggacGCGGa -3'
miRNA:   3'- cGCUCa--CGGCUCG-------------CCUGCUCCU----UGCU- -5'
6379 5' -56.9 NC_001847.1 + 27844 0.67 0.819542
Target:  5'- gGCGAGgacGCCGGcGCcagGGACGcgGGGGGCGc -3'
miRNA:   3'- -CGCUCa--CGGCU-CG---CCUGC--UCCUUGCu -5'
6379 5' -56.9 NC_001847.1 + 27905 0.73 0.489229
Target:  5'- cCGAG-GCCGAGgGGGCgGAGGGcGCGGa -3'
miRNA:   3'- cGCUCaCGGCUCgCCUG-CUCCU-UGCU- -5'
6379 5' -56.9 NC_001847.1 + 28061 0.66 0.880927
Target:  5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3'
miRNA:   3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.