miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
638 3' -62.6 AC_000017.1 + 4774 0.73 0.074167
Target:  5'- gGCACCcUCCGCCCGCGCUuUGUaaaaauGGCc -3'
miRNA:   3'- -CGUGGuGGGCGGGCGCGG-ACGau----CCG- -5'
638 3' -62.6 AC_000017.1 + 6707 0.82 0.01605
Target:  5'- cGCGCUugCCGCCCGCGCaugGCagcAGGCg -3'
miRNA:   3'- -CGUGGugGGCGGGCGCGga-CGa--UCCG- -5'
638 3' -62.6 AC_000017.1 + 7291 0.71 0.109865
Target:  5'- cGCGCUACCCGUagaaaagggaugCUGCGCCUaCcAGGCc -3'
miRNA:   3'- -CGUGGUGGGCG------------GGCGCGGAcGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 8500 0.7 0.125802
Target:  5'- gGUAUCACCUggaccuaGCCCGCGCCcugacccggcuaUGCgAGGUa -3'
miRNA:   3'- -CGUGGUGGG-------CGGGCGCGG------------ACGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 8592 0.72 0.102196
Target:  5'- cCACCGCCCGCCgcgcgguaccguaguCGCGCC-GCgGGGa -3'
miRNA:   3'- cGUGGUGGGCGG---------------GCGCGGaCGaUCCg -5'
638 3' -62.6 AC_000017.1 + 8727 0.71 0.112956
Target:  5'- aGCACCAgcuCCUGCCCGCGC--GC--GGCg -3'
miRNA:   3'- -CGUGGU---GGGCGGGCGCGgaCGauCCG- -5'
638 3' -62.6 AC_000017.1 + 9849 0.69 0.148627
Target:  5'- aGCACCAuguCCUuggGUCCG-GCCUGCUgaaugcgcAGGCg -3'
miRNA:   3'- -CGUGGU---GGG---CGGGCgCGGACGA--------UCCG- -5'
638 3' -62.6 AC_000017.1 + 9931 0.66 0.258174
Target:  5'- -gGCCGaCCGCCUGCGCauucaGC-AGGCc -3'
miRNA:   3'- cgUGGUgGGCGGGCGCGga---CGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 10820 0.67 0.204759
Target:  5'- -gGCCACUgGCCgCGCGCggcguaagcgGUUAGGCu -3'
miRNA:   3'- cgUGGUGGgCGG-GCGCGga--------CGAUCCG- -5'
638 3' -62.6 AC_000017.1 + 10842 0.72 0.092927
Target:  5'- cGCAgCAgCCG-CCGCGCCUGgaAGGa -3'
miRNA:   3'- -CGUgGUgGGCgGGCGCGGACgaUCCg -5'
638 3' -62.6 AC_000017.1 + 12145 0.7 0.140756
Target:  5'- uCGCCG-CUGCCCGUGCCaGCcaGGGCc -3'
miRNA:   3'- cGUGGUgGGCGGGCGCGGaCGa-UCCG- -5'
638 3' -62.6 AC_000017.1 + 12207 0.67 0.221411
Target:  5'- gGUGgCACCCGCgCGCGCUgGCaacgucGGCg -3'
miRNA:   3'- -CGUgGUGGGCGgGCGCGGaCGau----CCG- -5'
638 3' -62.6 AC_000017.1 + 12390 0.67 0.227213
Target:  5'- aGCGCCGCCCGCaCCGCcggGUCcguUGCgucuuGCa -3'
miRNA:   3'- -CGUGGUGGGCG-GGCG---CGG---ACGauc--CG- -5'
638 3' -62.6 AC_000017.1 + 12434 0.66 0.245394
Target:  5'- gGCGCCAgUCGUCCGUggaguuaagGCCggacgGCU-GGCu -3'
miRNA:   3'- -CGUGGUgGGCGGGCG---------CGGa----CGAuCCG- -5'
638 3' -62.6 AC_000017.1 + 13394 0.66 0.245394
Target:  5'- cGCGCgGUCaUGUCCaGCGCCacGCUGGGCg -3'
miRNA:   3'- -CGUGgUGG-GCGGG-CGCGGa-CGAUCCG- -5'
638 3' -62.6 AC_000017.1 + 13667 0.65 0.276974
Target:  5'- aGCGCCgccucuGCCUGCUCGCGCUguugcaacucuaGCaGGGUc -3'
miRNA:   3'- -CGUGG------UGGGCGGGCGCGGa-----------CGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 13745 1.13 0.000052
Target:  5'- cGCACCACCCGCCCGCGCCUGCUAGGCg -3'
miRNA:   3'- -CGUGGUGGGCGGGCGCGGACGAUCCG- -5'
638 3' -62.6 AC_000017.1 + 13899 0.69 0.162932
Target:  5'- aGCACagggauguGCCCgGCCCGCGCCcGCccacccgucgucaaAGGCa -3'
miRNA:   3'- -CGUGg-------UGGG-CGGGCGCGGaCGa-------------UCCG- -5'
638 3' -62.6 AC_000017.1 + 15106 0.72 0.100219
Target:  5'- uGCGCCAccCCCGCCCuguucgguGUcaucuuucaagcuuGCCUGgUAGGCg -3'
miRNA:   3'- -CGUGGU--GGGCGGG--------CG--------------CGGACgAUCCG- -5'
638 3' -62.6 AC_000017.1 + 15964 0.68 0.179418
Target:  5'- aCGCagGCCCcaGCCUGUGUuaUUGCUGGGCg -3'
miRNA:   3'- cGUGg-UGGG--CGGGCGCG--GACGAUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.