Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
638 | 3' | -62.6 | AC_000017.1 | + | 13745 | 1.13 | 0.000052 |
Target: 5'- cGCACCACCCGCCCGCGCCUGCUAGGCg -3' miRNA: 3'- -CGUGGUGGGCGGGCGCGGACGAUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 16808 | 0.66 | 0.264766 |
Target: 5'- cGCuCCACCCGCaCCuacaaGCGCgUGUaugaugAGGUg -3' miRNA: 3'- -CGuGGUGGGCG-GG-----CGCGgACGa-----UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 26584 | 0.66 | 0.264766 |
Target: 5'- aGCGCCAaggcuaCCGCUCGUGgC-GC-GGGCa -3' miRNA: 3'- -CGUGGUg-----GGCGGGCGCgGaCGaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 30681 | 0.67 | 0.233143 |
Target: 5'- -aGCUGCCCGCCaaGCGCCaaaaacugcUGCUuauGGUg -3' miRNA: 3'- cgUGGUGGGCGGg-CGCGG---------ACGAu--CCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 16454 | 0.67 | 0.227213 |
Target: 5'- cGCAcCCGCCC-CCCGCGCaa-CUAGauuGCa -3' miRNA: 3'- -CGU-GGUGGGcGGGCGCGgacGAUC---CG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 26016 | 0.67 | 0.223717 |
Target: 5'- --cCCGCCCGCCCaaugcggagcuuacCGCCUGCgucauuacccaGGGCc -3' miRNA: 3'- cguGGUGGGCGGGc-------------GCGGACGa----------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 12207 | 0.67 | 0.221411 |
Target: 5'- gGUGgCACCCGCgCGCGCUgGCaacgucGGCg -3' miRNA: 3'- -CGUgGUGGGCGgGCGCGGaCGau----CCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 17746 | 0.67 | 0.215736 |
Target: 5'- gGCAUgGCCgGCCaCG-GCCUGacGGGCg -3' miRNA: 3'- -CGUGgUGGgCGG-GCgCGGACgaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 10820 | 0.67 | 0.204759 |
Target: 5'- -gGCCACUgGCCgCGCGCggcguaagcgGUUAGGCu -3' miRNA: 3'- cgUGGUGGgCGG-GCGCGga--------CGAUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 18482 | 0.77 | 0.040319 |
Target: 5'- cCACCACCCGUCCcaucGCGCCcauggcuaccggagUGUUGGGCc -3' miRNA: 3'- cGUGGUGGGCGGG----CGCGG--------------ACGAUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 9849 | 0.69 | 0.148627 |
Target: 5'- aGCACCAuguCCUuggGUCCG-GCCUGCUgaaugcgcAGGCg -3' miRNA: 3'- -CGUGGU---GGG---CGGGCgCGGACGA--------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 24004 | 0.69 | 0.156898 |
Target: 5'- cGCGCCGCaCCGCguCCGCGCUcGg-GGGUg -3' miRNA: 3'- -CGUGGUG-GGCG--GGCGCGGaCgaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 33354 | 0.69 | 0.161187 |
Target: 5'- cGCACCGCCCGCagcauaaGaCGCCUuGUccuccGGGCa -3' miRNA: 3'- -CGUGGUGGGCGgg-----C-GCGGA-CGa----UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 13899 | 0.69 | 0.162932 |
Target: 5'- aGCACagggauguGCCCgGCCCGCGCCcGCccacccgucgucaaAGGCa -3' miRNA: 3'- -CGUGg-------UGGG-CGGGCGCGGaCGa-------------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 17786 | 0.68 | 0.186219 |
Target: 5'- cGCACCACCggcggcggcgcgcguCGCaCCGuCGCaUGCgcGGCg -3' miRNA: 3'- -CGUGGUGG---------------GCG-GGC-GCGgACGauCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 13667 | 0.65 | 0.276974 |
Target: 5'- aGCGCCgccucuGCCUGCUCGCGCUguugcaacucuaGCaGGGUc -3' miRNA: 3'- -CGUGG------UGGGCGGGCGCGGa-----------CGaUCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 26268 | 0.73 | 0.073957 |
Target: 5'- gGUGCCAUCCugggaagcaaggGCCCGCGgCUGCUgcugauaGGGCu -3' miRNA: 3'- -CGUGGUGGG------------CGGGCGCgGACGA-------UCCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 4774 | 0.73 | 0.074167 |
Target: 5'- gGCACCcUCCGCCCGCGCUuUGUaaaaauGGCc -3' miRNA: 3'- -CGUGGuGGGCGGGCGCGG-ACGau----CCG- -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 10842 | 0.72 | 0.092927 |
Target: 5'- cGCAgCAgCCG-CCGCGCCUGgaAGGa -3' miRNA: 3'- -CGUgGUgGGCgGGCGCGGACgaUCCg -5' |
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638 | 3' | -62.6 | AC_000017.1 | + | 15106 | 0.72 | 0.100219 |
Target: 5'- uGCGCCAccCCCGCCCuguucgguGUcaucuuucaagcuuGCCUGgUAGGCg -3' miRNA: 3'- -CGUGGU--GGGCGGG--------CG--------------CGGACgAUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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