miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
638 5' -47.1 AC_000017.1 + 12588 0.66 0.964989
Target:  5'- -gGCCUGGucuACGACgCGcUGCUuCAGCg -3'
miRNA:   3'- caUGGAUU---UGUUGaGCaACGAcGUCG- -5'
638 5' -47.1 AC_000017.1 + 24937 0.66 0.964989
Target:  5'- aGUGCCgggUAGGCAAagugggugacCUCGaUGCUGCguuuuAGCa -3'
miRNA:   3'- -CAUGG---AUUUGUU----------GAGCaACGACG-----UCG- -5'
638 5' -47.1 AC_000017.1 + 25402 0.66 0.964989
Target:  5'- aGUGCCUGGaggagcGCAACcugaaGgaGCUGCAGa -3'
miRNA:   3'- -CAUGGAUU------UGUUGag---CaaCGACGUCg -5'
638 5' -47.1 AC_000017.1 + 25822 0.66 0.964989
Target:  5'- --cCCUGGucuGCAAUUCGcaGCUGCuuAGCg -3'
miRNA:   3'- cauGGAUU---UGUUGAGCaaCGACG--UCG- -5'
638 5' -47.1 AC_000017.1 + 13406 0.66 0.964989
Target:  5'- -cGCCUAAugGACUacUUGCaucgcGCGGCc -3'
miRNA:   3'- caUGGAUUugUUGAgcAACGa----CGUCG- -5'
638 5' -47.1 AC_000017.1 + 33429 0.66 0.960956
Target:  5'- uGUGCCcggaGGACAAggCGUcuuaUGCUGCGGg -3'
miRNA:   3'- -CAUGGa---UUUGUUgaGCA----ACGACGUCg -5'
638 5' -47.1 AC_000017.1 + 15289 0.66 0.960956
Target:  5'- -aGCCUccGCAGCg-GggGCgGCAGCu -3'
miRNA:   3'- caUGGAuuUGUUGagCaaCGaCGUCG- -5'
638 5' -47.1 AC_000017.1 + 24360 0.66 0.960956
Target:  5'- cUACCUAgaugugggaGACGACgugcUGUUGaagcauCUGCAGCg -3'
miRNA:   3'- cAUGGAU---------UUGUUGa---GCAAC------GACGUCG- -5'
638 5' -47.1 AC_000017.1 + 7507 0.66 0.956612
Target:  5'- uUACCUGGGCGGCgagcacgaucUCGUcaaagccguugaUGUUGUGGCc -3'
miRNA:   3'- cAUGGAUUUGUUG----------AGCA------------ACGACGUCG- -5'
638 5' -47.1 AC_000017.1 + 2231 0.66 0.956612
Target:  5'- -cGCCUGGcuuccuccuGCuGCUgcUGUUGCUGCuGCu -3'
miRNA:   3'- caUGGAUU---------UGuUGA--GCAACGACGuCG- -5'
638 5' -47.1 AC_000017.1 + 34948 0.66 0.956612
Target:  5'- -aGCCccGAUguaAGCUUGUUGCauggGCGGCg -3'
miRNA:   3'- caUGGauUUG---UUGAGCAACGa---CGUCG- -5'
638 5' -47.1 AC_000017.1 + 11718 0.66 0.951951
Target:  5'- -cGCCaUGAGCGGCUUGcuauuuggguuUUGCUcCAGCg -3'
miRNA:   3'- caUGG-AUUUGUUGAGC-----------AACGAcGUCG- -5'
638 5' -47.1 AC_000017.1 + 25108 0.67 0.941649
Target:  5'- uUACCgu-GgAGCUUGagUGCaUGCAGCg -3'
miRNA:   3'- cAUGGauuUgUUGAGCa-ACG-ACGUCG- -5'
638 5' -47.1 AC_000017.1 + 18907 0.67 0.941649
Target:  5'- aGUACCUGAGCcc--CGg-GCUGguGCa -3'
miRNA:   3'- -CAUGGAUUUGuugaGCaaCGACguCG- -5'
638 5' -47.1 AC_000017.1 + 33244 0.67 0.936
Target:  5'- cGUGCaucaGGAUAGggCGguggUGCUGCAGCa -3'
miRNA:   3'- -CAUGga--UUUGUUgaGCa---ACGACGUCG- -5'
638 5' -47.1 AC_000017.1 + 12991 0.67 0.936
Target:  5'- cUugCUGAcgccCAACUCGcgccugUUGCUGCuGCu -3'
miRNA:   3'- cAugGAUUu---GUUGAGC------AACGACGuCG- -5'
638 5' -47.1 AC_000017.1 + 7960 0.67 0.923691
Target:  5'- -gGCCUuugggAAGCAGCUCGUgcccuucaUGCUGgucaugaaauuCGGCg -3'
miRNA:   3'- caUGGA-----UUUGUUGAGCA--------ACGAC-----------GUCG- -5'
638 5' -47.1 AC_000017.1 + 24407 0.68 0.910033
Target:  5'- aGUGCgCUAuuaucuGCGACgCGUUGCaagagcGCAGCg -3'
miRNA:   3'- -CAUG-GAUu-----UGUUGaGCAACGa-----CGUCG- -5'
638 5' -47.1 AC_000017.1 + 3853 0.68 0.895043
Target:  5'- -gGCUgAAGCGGCggCGgagGCUGCAGUc -3'
miRNA:   3'- caUGGaUUUGUUGa-GCaa-CGACGUCG- -5'
638 5' -47.1 AC_000017.1 + 4952 0.69 0.842535
Target:  5'- uUACCggcuGCAACUgGUaguuaagagaGCUGCAGCu -3'
miRNA:   3'- cAUGGauu-UGUUGAgCAa---------CGACGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.