miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 82122 0.7 0.837857
Target:  5'- aGG-CCCGAGCGCgcagCGGCCGccGcuGUCGg -3'
miRNA:   3'- -CCaGGGCUUGCG----GCCGGUa-CuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 21778 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 124591 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 134185 0.69 0.846039
Target:  5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3'
miRNA:   3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 23696 0.69 0.846039
Target:  5'- uGGUCCaCGAACggggcgcgGUCGGCgCA-GAGGUCGa -3'
miRNA:   3'- -CCAGG-GCUUG--------CGGCCG-GUaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 31372 0.69 0.846039
Target:  5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3'
miRNA:   3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 91762 0.69 0.851649
Target:  5'- cGGUCCgCGGgcgcuccgucggcgGCGCUGGCCGcGGAcgcuucGUCGg -3'
miRNA:   3'- -CCAGG-GCU--------------UGCGGCCGGUaCUU------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 10507 0.69 0.854023
Target:  5'- cGGcCCCGcgcuGCuGCgGGCCAUGGAG-CGg -3'
miRNA:   3'- -CCaGGGCu---UG-CGgCCGGUACUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 55891 0.69 0.854023
Target:  5'- cGG-CCCG-ACGCCGGCUAgcagcUCGg -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUacuuuAGC- -5'
6380 3' -53.9 NC_001847.1 + 58753 0.69 0.876724
Target:  5'- cGGcCCCcGGCGCCccccccgaGGCCGUGAAGaggCGa -3'
miRNA:   3'- -CCaGGGcUUGCGG--------CCGGUACUUUa--GC- -5'
6380 3' -53.9 NC_001847.1 + 29466 0.69 0.883854
Target:  5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 132279 0.69 0.883854
Target:  5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 75388 0.68 0.890757
Target:  5'- cGG-CaCCGGACG-CGGCCAgcGAGUCGa -3'
miRNA:   3'- -CCaG-GGCUUGCgGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 52929 0.68 0.897428
Target:  5'- gGGgcgCCCgcGAAgGCCGuGCCGguuaagGAAGUCGa -3'
miRNA:   3'- -CCa--GGG--CUUgCGGC-CGGUa-----CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 41521 0.68 0.897428
Target:  5'- cGUCCgCGGccGCGCCGGCCG-GAGc--- -3'
miRNA:   3'- cCAGG-GCU--UGCGGCCGGUaCUUuagc -5'
6380 3' -53.9 NC_001847.1 + 12014 0.68 0.897428
Target:  5'- uGGcUCUgGGGCGCCGGC---GAGGUCGu -3'
miRNA:   3'- -CC-AGGgCUUGCGGCCGguaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 3587 0.68 0.903865
Target:  5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3'
miRNA:   3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 78337 0.68 0.903865
Target:  5'- --cCCCaGGcGCGCCGGCCccGUGAGcgCGa -3'
miRNA:   3'- ccaGGG-CU-UGCGGCCGG--UACUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 106400 0.68 0.903865
Target:  5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3'
miRNA:   3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 14794 0.68 0.910064
Target:  5'- cGGUCCCGuuguAGCGCCgcccGGCCggGAGc--- -3'
miRNA:   3'- -CCAGGGC----UUGCGG----CCGGuaCUUuagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.