miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 23696 0.69 0.846039
Target:  5'- uGGUCCaCGAACggggcgcgGUCGGCgCA-GAGGUCGa -3'
miRNA:   3'- -CCAGG-GCUUG--------CGGCCG-GUaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 27806 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 29466 0.69 0.883854
Target:  5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 30213 0.72 0.707183
Target:  5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 31372 0.69 0.846039
Target:  5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3'
miRNA:   3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 31393 0.67 0.937432
Target:  5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3'
miRNA:   3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5'
6380 3' -53.9 NC_001847.1 + 32080 0.67 0.92174
Target:  5'- cGGgccCCUGGGCGCCGGgCGUcgGGGcgCGa -3'
miRNA:   3'- -CCa--GGGCUUGCGGCCgGUA--CUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 34393 0.67 0.932444
Target:  5'- gGGgcgaCCUGGACcCCGGCCccGAGAgcUCGg -3'
miRNA:   3'- -CCa---GGGCUUGcGGCCGGuaCUUU--AGC- -5'
6380 3' -53.9 NC_001847.1 + 34595 0.7 0.826085
Target:  5'- aGG-CCCGGGCGCUGGCgCGgcggcgcgccgagGAAGUCc -3'
miRNA:   3'- -CCaGGGCUUGCGGCCG-GUa------------CUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 35011 0.66 0.965716
Target:  5'- cGG-CCgCGGACGUgGGCCAgcUGAcgcGGUUGa -3'
miRNA:   3'- -CCaGG-GCUUGCGgCCGGU--ACU---UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 38946 0.66 0.954984
Target:  5'- cGGgCCCGGGgGCCGcgagcGCCAUGGcggCGg -3'
miRNA:   3'- -CCaGGGCUUgCGGC-----CGGUACUuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 39752 0.71 0.775708
Target:  5'- uGUCCCcGGCGCCGGCCucaGAGccggCGg -3'
miRNA:   3'- cCAGGGcUUGCGGCCGGua-CUUua--GC- -5'
6380 3' -53.9 NC_001847.1 + 41403 0.66 0.945356
Target:  5'- -cUCCCGGACcgcgcggucuagcaGCCGGCCGgugcgaUGcGAGUCGc -3'
miRNA:   3'- ccAGGGCUUG--------------CGGCCGGU------AC-UUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 41521 0.68 0.897428
Target:  5'- cGUCCgCGGccGCGCCGGCCG-GAGc--- -3'
miRNA:   3'- cCAGG-GCU--UGCGGCCGGUaCUUuagc -5'
6380 3' -53.9 NC_001847.1 + 43102 0.67 0.92174
Target:  5'- aGGcgCCCGGagGCGCCGGCgGUGcccgCa -3'
miRNA:   3'- -CCa-GGGCU--UGCGGCCGgUACuuuaGc -5'
6380 3' -53.9 NC_001847.1 + 47548 0.66 0.958786
Target:  5'- cGUCUCaacGGCGCCGGCCucgGUGAGcaCGg -3'
miRNA:   3'- cCAGGGc--UUGCGGCCGG---UACUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 50026 0.7 0.837857
Target:  5'- gGGcCCCGGGCGC--GCCGUGAuGAUCa -3'
miRNA:   3'- -CCaGGGCUUGCGgcCGGUACU-UUAGc -5'
6380 3' -53.9 NC_001847.1 + 50490 0.66 0.953798
Target:  5'- cGGUCCgGccguaucuaucaacGGCGCgGGCCAgGAGuUCGc -3'
miRNA:   3'- -CCAGGgC--------------UUGCGgCCGGUaCUUuAGC- -5'
6380 3' -53.9 NC_001847.1 + 50834 0.66 0.950951
Target:  5'- gGGgcgcugCCCGcgccggggGGCGCUGGUgAUGAcGUCGg -3'
miRNA:   3'- -CCa-----GGGC--------UUGCGGCCGgUACUuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 50866 0.68 0.916023
Target:  5'- cGGcgCCCGGGCGCCGacgagaacGCCAgGAGcUCa -3'
miRNA:   3'- -CCa-GGGCUUGCGGC--------CGGUaCUUuAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.