miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 142 0.66 0.946683
Target:  5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3'
miRNA:   3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 769 0.67 0.937432
Target:  5'- cGG-CCCGccgccggcGGCGCCGGCCucgucGUCGu -3'
miRNA:   3'- -CCaGGGC--------UUGCGGCCGGuacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 934 0.66 0.946683
Target:  5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3'
miRNA:   3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 2023 0.66 0.962362
Target:  5'- aGGUuuUCCagcacGGCGCCGGCCGUGGccacgauagGGUCu -3'
miRNA:   3'- -CCA--GGGc----UUGCGGCCGGUACU---------UUAGc -5'
6380 3' -53.9 NC_001847.1 + 2345 0.75 0.573767
Target:  5'- cGGcUCCCGccGCGCCGGCCcgGccgcGUCGg -3'
miRNA:   3'- -CC-AGGGCu-UGCGGCCGGuaCuu--UAGC- -5'
6380 3' -53.9 NC_001847.1 + 3422 0.66 0.962362
Target:  5'- --gCCCGGggGCGCCaGGCgCAgcccagGggGUCGa -3'
miRNA:   3'- ccaGGGCU--UGCGG-CCG-GUa-----CuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 3587 0.68 0.903865
Target:  5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3'
miRNA:   3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 4230 0.66 0.96373
Target:  5'- cGGUgCCGGcgcGCGCCGGCac-GAGcugcgccagcagccaGUCGg -3'
miRNA:   3'- -CCAgGGCU---UGCGGCCGguaCUU---------------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 5319 0.71 0.78505
Target:  5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3'
miRNA:   3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 10507 0.69 0.854023
Target:  5'- cGGcCCCGcgcuGCuGCgGGCCAUGGAG-CGg -3'
miRNA:   3'- -CCaGGGCu---UG-CGgCCGGUACUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 10698 0.67 0.927213
Target:  5'- -uUCCCGcacCGCCGGCCucgGAGGagGg -3'
miRNA:   3'- ccAGGGCuu-GCGGCCGGua-CUUUagC- -5'
6380 3' -53.9 NC_001847.1 + 10925 0.66 0.958786
Target:  5'- cGG-CCCGAAUccucgGCCGGCCc--GAAUCc -3'
miRNA:   3'- -CCaGGGCUUG-----CGGCCGGuacUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 11584 0.67 0.929335
Target:  5'- cGGUgCCGGuugcuucuGCGCUGGCCggcgcguccucgaugGUGAGcUCGa -3'
miRNA:   3'- -CCAgGGCU--------UGCGGCCGG---------------UACUUuAGC- -5'
6380 3' -53.9 NC_001847.1 + 12014 0.68 0.897428
Target:  5'- uGGcUCUgGGGCGCCGGC---GAGGUCGu -3'
miRNA:   3'- -CC-AGGgCUUGCGGCCGguaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 12999 0.66 0.960959
Target:  5'- cGUCCCGcgcggcgcccugcGCGCCGGCCGUcg---CGa -3'
miRNA:   3'- cCAGGGCu------------UGCGGCCGGUAcuuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 14488 0.66 0.965716
Target:  5'- cGUCCCGGagGCGCUGGUUcuGUcGGAcUCGg -3'
miRNA:   3'- cCAGGGCU--UGCGGCCGG--UA-CUUuAGC- -5'
6380 3' -53.9 NC_001847.1 + 14794 0.68 0.910064
Target:  5'- cGGUCCCGuuguAGCGCCgcccGGCCggGAGc--- -3'
miRNA:   3'- -CCAGGGC----UUGCGG----CCGGuaCUUuagc -5'
6380 3' -53.9 NC_001847.1 + 18574 0.67 0.942177
Target:  5'- cGG-CCCGugUGCCGcGCCA--AAGUCGc -3'
miRNA:   3'- -CCaGGGCuuGCGGC-CGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 19611 0.66 0.958416
Target:  5'- cGGgCCCGAGCuCgGGCCcgGGGcgccggcGUCGg -3'
miRNA:   3'- -CCaGGGCUUGcGgCCGGuaCUU-------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 21778 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.