miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 100852 0.81 0.293475
Target:  5'- aGGgCCgGAGCGCCGGCCcgccgGggGUCGg -3'
miRNA:   3'- -CCaGGgCUUGCGGCCGGua---CuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 78337 0.68 0.903865
Target:  5'- --cCCCaGGcGCGCCGGCCccGUGAGcgCGa -3'
miRNA:   3'- ccaGGG-CU-UGCGGCCGG--UACUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 106797 0.68 0.916023
Target:  5'- cGGgggCCCGGGCGCgCGGCCccgcGggG-CGc -3'
miRNA:   3'- -CCa--GGGCUUGCG-GCCGGua--CuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 35011 0.66 0.965716
Target:  5'- cGG-CCgCGGACGUgGGCCAgcUGAcgcGGUUGa -3'
miRNA:   3'- -CCaGG-GCUUGCGgCCGGU--ACU---UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 77487 0.71 0.766236
Target:  5'- cGG-CCCGGccCGCCGGCCc--GAGUCGg -3'
miRNA:   3'- -CCaGGGCUu-GCGGCCGGuacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 108132 0.71 0.78505
Target:  5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3'
miRNA:   3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 91747 0.71 0.794252
Target:  5'- cGcCCUGcgcGCGUCGGCCGUGaAGAUCGc -3'
miRNA:   3'- cCaGGGCu--UGCGGCCGGUAC-UUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 119842 0.7 0.812201
Target:  5'- cGGcCCCcGACGCCGuGCCGgucagcgucGGGAUCGg -3'
miRNA:   3'- -CCaGGGcUUGCGGC-CGGUa--------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 23696 0.69 0.846039
Target:  5'- uGGUCCaCGAACggggcgcgGUCGGCgCA-GAGGUCGa -3'
miRNA:   3'- -CCAGG-GCUUG--------CGGCCG-GUaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 106400 0.68 0.903865
Target:  5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3'
miRNA:   3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 10507 0.69 0.854023
Target:  5'- cGGcCCCGcgcuGCuGCgGGCCAUGGAG-CGg -3'
miRNA:   3'- -CCaGGGCu---UG-CGgCCGGUACUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 124591 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 105158 0.75 0.573767
Target:  5'- cGGcUCCCGccGCGCCGGCCcgGccgcGUCGg -3'
miRNA:   3'- -CC-AGGGCu-UGCGGCCGGuaCuu--UAGC- -5'
6380 3' -53.9 NC_001847.1 + 132279 0.69 0.883854
Target:  5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 102262 0.73 0.645794
Target:  5'- cGGccCCCGAGgccuCGCCGucggccGCCGUGAGGUCGa -3'
miRNA:   3'- -CCa-GGGCUU----GCGGC------CGGUACUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 34595 0.7 0.826085
Target:  5'- aGG-CCCGGGCGCUGGCgCGgcggcgcgccgagGAAGUCc -3'
miRNA:   3'- -CCaGGGCUUGCGGCCG-GUa------------CUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 75388 0.68 0.890757
Target:  5'- cGG-CaCCGGACG-CGGCCAgcGAGUCGa -3'
miRNA:   3'- -CCaG-GGCUUGCgGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 50866 0.68 0.916023
Target:  5'- cGGcgCCCGGGCGCCGacgagaacGCCAgGAGcUCa -3'
miRNA:   3'- -CCa-GGGCUUGCGGC--------CGGUaCUUuAGc -5'
6380 3' -53.9 NC_001847.1 + 133026 0.72 0.707183
Target:  5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 115299 0.71 0.794252
Target:  5'- --cCCCGGGCGCgGGCCAaGGGcgcuguGUCGa -3'
miRNA:   3'- ccaGGGCUUGCGgCCGGUaCUU------UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.