miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 120839 0.66 0.965716
Target:  5'- aGGcCCCGAgagGCgGCCGGCCAcGccauuUCGc -3'
miRNA:   3'- -CCaGGGCU---UG-CGGCCGGUaCuuu--AGC- -5'
6380 3' -53.9 NC_001847.1 + 125436 0.66 0.954984
Target:  5'- aGGaCCCGcgcGugGCUGGCCGgagGAcgggcgGGUCGg -3'
miRNA:   3'- -CCaGGGC---UugCGGCCGGUa--CU------UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 50834 0.66 0.950951
Target:  5'- gGGgcgcugCCCGcgccggggGGCGCUGGUgAUGAcGUCGg -3'
miRNA:   3'- -CCa-----GGGC--------UUGCGGCCGgUACUuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 27806 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 66171 0.66 0.946683
Target:  5'- -cUCCCGGgcugGCGCCGGCCGc------- -3'
miRNA:   3'- ccAGGGCU----UGCGGCCGGUacuuuagc -5'
6380 3' -53.9 NC_001847.1 + 934 0.66 0.946683
Target:  5'- cGGgaagCCCGAGC-CCGcGCCcgGGGA-CGa -3'
miRNA:   3'- -CCa---GGGCUUGcGGC-CGGuaCUUUaGC- -5'
6380 3' -53.9 NC_001847.1 + 142 0.66 0.946683
Target:  5'- gGGcCUCGGGCcCCGGCCggGggGcCGg -3'
miRNA:   3'- -CCaGGGCUUGcGGCCGGuaCuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 41403 0.66 0.945356
Target:  5'- -cUCCCGGACcgcgcggucuagcaGCCGGCCGgugcgaUGcGAGUCGc -3'
miRNA:   3'- ccAGGGCUUG--------------CGGCCGGU------AC-UUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 95935 0.66 0.946683
Target:  5'- --gCUCGAA-GCUGGCCAUGAccAUCGc -3'
miRNA:   3'- ccaGGGCUUgCGGCCGGUACUu-UAGC- -5'
6380 3' -53.9 NC_001847.1 + 38946 0.66 0.954984
Target:  5'- cGGgCCCGGGgGCCGcgagcGCCAUGGcggCGg -3'
miRNA:   3'- -CCaGGGCUUgCGGC-----CGGUACUuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 76573 0.66 0.954984
Target:  5'- cGG-CCCGcuuaGCUGGCCGgcAAGUCGa -3'
miRNA:   3'- -CCaGGGCuug-CGGCCGGUacUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 84362 0.66 0.954984
Target:  5'- uGGUCCCGAagACGCCGaGCgGgcuccgCGu -3'
miRNA:   3'- -CCAGGGCU--UGCGGC-CGgUacuuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 95941 0.66 0.962015
Target:  5'- cGGcgCCgGAACGCUGGCgggcgagCGUGAGcgCa -3'
miRNA:   3'- -CCa-GGgCUUGCGGCCG-------GUACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 12999 0.66 0.960959
Target:  5'- cGUCCCGcgcggcgcccugcGCGCCGGCCGUcg---CGa -3'
miRNA:   3'- cCAGGGCu------------UGCGGCCGGUAcuuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 10925 0.66 0.958786
Target:  5'- cGG-CCCGAAUccucgGCCGGCCc--GAAUCc -3'
miRNA:   3'- -CCaGGGCUUG-----CGGCCGGuacUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 72387 0.66 0.958786
Target:  5'- uGGUCCU-AGCGCCGGUgcUGGuguUCGu -3'
miRNA:   3'- -CCAGGGcUUGCGGCCGguACUuu-AGC- -5'
6380 3' -53.9 NC_001847.1 + 47548 0.66 0.958786
Target:  5'- cGUCUCaacGGCGCCGGCCucgGUGAGcaCGg -3'
miRNA:   3'- cCAGGGc--UUGCGGCCGG---UACUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 67519 0.66 0.954984
Target:  5'- cGGUCgCGGACG-CGGCCAacGAcAUCc -3'
miRNA:   3'- -CCAGgGCUUGCgGCCGGUa-CUuUAGc -5'
6380 3' -53.9 NC_001847.1 + 106938 0.66 0.954984
Target:  5'- cGGg-CCGAACGCCG-CCGUGGcg-CGc -3'
miRNA:   3'- -CCagGGCUUGCGGCcGGUACUuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 86990 0.66 0.954984
Target:  5'- cGGg-CCGGcgcGCGCCGGCCcgGcgGUUa -3'
miRNA:   3'- -CCagGGCU---UGCGGCCGGuaCuuUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.